Browse Element(s) Details


Os.50588.1.S1_at

Description gb:AK121962.1
DB_XREF= gi:37991585
TID=Os.50588.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.50588 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033108B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033108B06, full insert sequence.
FL= gb:AK121962.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3437011/11patatin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g34320Os.53638.1.S1_at6/1111+19618171..19623872uvb-resistance protein uvr8, possible, putative, expressed
LOC_Os11g34330OsAffx.31294.1.S1_x_at11/1111+19624425..19625188hypothetical protein
LOC_Os11g34330OsAffx.31294.1.S1_at11/1111+19624425..19625188hypothetical protein
LOC_Os11g34340OsAffx.19152.1.S1_at11/1111+19626807..19627196hypothetical protein
LOC_Os11g34350Os.11992.1.S1_at11/1111+19627755..19633072ATP-binding cassette sub-family E member 1, putative, expressed
LOC_Os11g34360Os.7038.1.S1_at11/1111+19634956..19639326Lung seven transmembrane receptor family protein, expressed
LOC_Os11g34370Os.50588.1.S1_at11/1111+19643320..19646664patatin, putative, expressed
LOC_Os11g34380OsAffx.19153.1.S1_at11/1111+19647096..19647845hypothetical protein
LOC_Os11g34390OsAffx.31295.1.S1_at11/1111+19651224..19652722Glycosyltransferase 6, putative, expressed
LOC_Os11g34400Os.47130.4.A1_x_at1/1111+19655918..19656244retrotransposon protein, putative, unclassified
LOC_Os11g34410NANA11+19657235..19662874retrotransposon protein, putative, unclassified
LOC_Os11g34420Os.28943.1.S1_x_at2/1111+19663496..19666719retrotransposon protein, putative, unclassified
LOC_Os11g34430Os.47130.4.A1_x_at1/1111+19667659..19667985retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50588.1.S1_at--1134--8411Chr11:19644644..19644668 (25 bp)
GGCCTTACGTTGTTTATGCCACCAA
LOC_Os11g34370
Os.50588.1.S1_at--42--2131Chr11:19643909..19643930 (22 bp)
ACAGTTCGAATTTGTGCTTTCCCAG
LOC_Os11g34370
Os.50588.1.S1_at--566--10291Chr11:19643892..19643916 (25 bp)
TTTCCCAGCCAGTCGACTAGGATTG
LOC_Os11g34370
Os.50588.1.S1_at--501--151Chr11:19643855..19643879 (25 bp)
ATTAGTCCAGACTGCAATCCGGAGA
LOC_Os11g34370
Os.50588.1.S1_at--1069--3371Chr11:19643731..19643755 (25 bp)
CAGCTGTTTAACTGGGCTCTGGAAC
LOC_Os11g34370
Os.50588.1.S1_at--387--5371Chr11:19643567..19643591 (25 bp)
GAAGACCCTGAGTTCTTGAACCTAA
LOC_Os11g34370
Os.50588.1.S1_at--925--1451Chr11:19643486..19643510 (25 bp)
AGAAGTCTCTCACGTACAACTGCAT
LOC_Os11g34370
Os.50588.1.S1_at--91--1991Chr11:19643468..19643492 (25 bp)
ACTGCATCAGCTGTATTTCTTTTCC
LOC_Os11g34370
Os.50588.1.S1_at--399--3131Chr11:19643441..19643465 (25 bp)
AATTTTGCCAGCTCTAGGTTACCAG
LOC_Os11g34370
Os.50588.1.S1_at--995--3831Chr11:19643383..19643407 (25 bp)
CTGCAACCACACGAGAGCTTTACTA
LOC_Os11g34370
Os.50588.1.S1_at--816--10471Chr11:19643364..19643388 (25 bp)
TTACTATGCTACTCGTTGCCTTGAT
LOC_Os11g34370
Target Sequence 
GGCCTTACGTTGTTTATGCCACCAACTTCTGCTTCCGAAACAGTTCGAATTTGTGCTTTCCCAGCCAGTCGACTAGGATT
GCAAGGGATTGGTATTAGTCCAGACTGCAATCCGGAGAACAGAGCTAGCCCCCGACAGCTGTTTAACTGGGCTCTGGAAC
CCGCCGAAGACGAGGTTCTAGACAAATTATATGAGCTTGGGTATCTGGATGCAGCTGTATGGGCTGACCAGAATCAANGT
TGAGTTGATTGTGAAGAATGAACAGCCACTNCCGCGTCACANANTTGAGAAGACACCAACAAGAAGACCCTGAGTTCTTG
AACCTAACAGTATTTGGTTTGCTCAAAAGCTAACATCTGAATCTGTTTGCCCCAGCTGTGCTCAGAAGTCTCTCACGTAC
AACTGCATCAGCTGTATTTCTTTTCCCAAATTTTGCCAGCTCTAGGTTACCAGTTCAATACTACAATGGTTTGTAAAGTG
TGACTGCTGCAACCACACGAGAGCTTTACTATGCTACTCGTTGCCTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50588.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis