Browse Element(s) Details


Os.53638.1.S1_at

Description gb:AK073687.1
DB_XREF= gi:32983710
TID=Os.53638.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53638 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033055O21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033055O21, full insert sequence.
FL= gb:AK073687.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g343206/11uvb-resistance protein uvr8, possible, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g34290Os.15833.1.S1_at3/1111+19583126..19593188retrotransposon protein, putative, unclassified
LOC_Os11g34290OsAffx.22699.1.S1_x_at3/1111+19583126..19593188retrotransposon protein, putative, unclassified
LOC_Os11g34290OsAffx.20631.1.S1_x_at3/1111+19583126..19593188retrotransposon protein, putative, unclassified
LOC_Os11g34290OsAffx.18275.1.S1_x_at1/1111+19583126..19593188retrotransposon protein, putative, unclassified
LOC_Os11g34290Os.49936.2.A1_at1/1111+19583126..19593188retrotransposon protein, putative, unclassified
LOC_Os11g34290Os.33601.3.S1_x_at1/1111+19583126..19593188retrotransposon protein, putative, unclassified
LOC_Os11g34300Os.7943.1.S1_a_at11/1111+19596795..19605549MRG family protein, putative, expressed
LOC_Os11g34300Os.7943.3.S1_s_at8/1111+19596795..19605549MRG family protein, putative, expressed
LOC_Os11g34300Os.39952.1.S1_at5/1111+19596795..19605549MRG family protein, putative, expressed
LOC_Os11g34300OsAffx.31293.1.S1_at1/1111+19596795..19605549MRG family protein, putative, expressed
LOC_Os11g34310Os.16701.1.S1_at11/1111+19608321..19612124Centromere/kinetochore protein zw10 homolog, putative, expressed
LOC_Os11g34320Os.53638.1.S1_at6/1111+19618171..19623872uvb-resistance protein uvr8, possible, putative, expressed
LOC_Os11g34330OsAffx.31294.1.S1_x_at11/1111+19624425..19625188hypothetical protein
LOC_Os11g34330OsAffx.31294.1.S1_at11/1111+19624425..19625188hypothetical protein
LOC_Os11g34340OsAffx.19152.1.S1_at11/1111+19626807..19627196hypothetical protein
LOC_Os11g34350Os.11992.1.S1_at11/1111+19627755..19633072ATP-binding cassette sub-family E member 1, putative, expressed
LOC_Os11g34360Os.7038.1.S1_at11/1111+19634956..19639326Lung seven transmembrane receptor family protein, expressed
LOC_Os11g34370Os.50588.1.S1_at11/1111+19643320..19646664patatin, putative, expressed
LOC_Os11g34380OsAffx.19153.1.S1_at11/1111+19647096..19647845hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009411biological_processresponse to UV
GO:0003682molecular_functionchromatin binding
GO:0005085molecular_functionguanyl-nucleotide exchange factor activity
GO:0008270molecular_functionzinc ion binding
GO:0008536molecular_functionRan GTPase binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53638.1.S1_at--237--7491Chr11:19619109..19619133 (25 bp)
GTGGTTGGAAGCACACCGCTGTAAT
LOC_Os11g34320
Os.53638.1.S1_at--785--9871Chr11:19618572..19618596 (25 bp)
TACTTTTTTCGAAGAGGGCCATTCT
LOC_Os11g34320
Os.53638.1.S1_at--359--9571Chr11:19618290..19618574 (25 bp)
TCTTCTGGTGGACAGTTAGGACACG
LOC_Os11g34320
Os.53638.1.S1_at--869--2571Chr11:19618263..19618287 (25 bp)
AACGATGTTGATTACTTTGAACCTA
LOC_Os11g34320
Os.53638.1.S1_at--463--3011Chr11:19618218..19618242 (25 bp)
AATGCAAGGGCCGTCCATGTGTCAT
LOC_Os11g34320
Os.53638.1.S1_at--1102--7491Chr11:19618193..19618217 (25 bp)
GTGGTTTCAATCATACTGGTGCAAT
LOC_Os11g34320
Os.53638.1.S1_at--768--151Chr11:19618146..19618170 (25 bp)
ATTTTTACATCACAGCAGGACCCCA
NONE
Os.53638.1.S1_at--365--971Chr11:19618130..19618154 (25 bp)
AGGACCCCATCCAAAGCATGCTTAT
NONE
Os.53638.1.S1_at--647--3111Chr11:19618021..19618045 (25 bp)
AATTAAACTGATTACACCCCTCGCA
NONE
Os.53638.1.S1_at--36--2791Chr11:19617956..19617980 (25 bp)
AAGAGGCAATCTGGATGCATTTGTT
NONE
Os.53638.1.S1_at--397--271Chr11:19617866..19617890 (25 bp)
ATATGTATAATCTTCACGACCAATA
NONE
Target Sequence 
GTGGTTGGAAGCACACCGCTGTAATTTCAGGTGGAGATATTTACACGTGGGGCTGGGGAGGTGCTAACGGTACTTTTTTC
GAAGAGGGCCATTCTTCTGGTGGACAGTTAGGACACGGAAACGATGTTGATTACTTTGAACCTATGATGGTGGAATTCGG
CAAGAATGCAAGGGCCGTCCATGTGTCATGTGGTTTCAATCATACTGGTGCAATATTTGAATACAGCGAGAACTGAATTT
TTACATCACAGCAGGACCCCATCCAAAGCATGCTTATTACCAAGTTATAAGTGCACATACAAGAGAAAGGAAGATAGGAT
AAAGTTTTGCTCTTTAATTCGAGTGTATAAAAAGAAAAATAAATTAAACTGATTACACCCCTCGCATAGGGTGGGGGTGG
GGGGTCTAAATTAAGATAAACAGAACAAGAGGCAATCTGGATGCATTTGTTGTATGTATCAGAATTACAGGTTAGTAGAA
CTGTATATTGTTCTTTCATTATTTTTCTTTTAATCCATATGTATAATCTTCACGACCAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53638.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis