Browse Element(s) Details


Os.11992.1.S1_at

Description gb:AK103366.1
DB_XREF= gi:32988575
TID=Os.11992.1
CNT=31
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.11992 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) RNase L inhibitor-like protein mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033126O11, full insert sequence.
FL= gb:AK103366.1 gb:AK102362.1 gb:AY093583.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3435011/11ATP-binding cassette sub-family E member 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g34300Os.7943.1.S1_a_at11/1111+19596795..19605549MRG family protein, putative, expressed
LOC_Os11g34300Os.7943.3.S1_s_at8/1111+19596795..19605549MRG family protein, putative, expressed
LOC_Os11g34300Os.39952.1.S1_at5/1111+19596795..19605549MRG family protein, putative, expressed
LOC_Os11g34300OsAffx.31293.1.S1_at1/1111+19596795..19605549MRG family protein, putative, expressed
LOC_Os11g34310Os.16701.1.S1_at11/1111+19608321..19612124Centromere/kinetochore protein zw10 homolog, putative, expressed
LOC_Os11g34320Os.53638.1.S1_at6/1111+19618171..19623872uvb-resistance protein uvr8, possible, putative, expressed
LOC_Os11g34330OsAffx.31294.1.S1_x_at11/1111+19624425..19625188hypothetical protein
LOC_Os11g34330OsAffx.31294.1.S1_at11/1111+19624425..19625188hypothetical protein
LOC_Os11g34340OsAffx.19152.1.S1_at11/1111+19626807..19627196hypothetical protein
LOC_Os11g34350Os.11992.1.S1_at11/1111+19627755..19633072ATP-binding cassette sub-family E member 1, putative, expressed
LOC_Os11g34360Os.7038.1.S1_at11/1111+19634956..19639326Lung seven transmembrane receptor family protein, expressed
LOC_Os11g34370Os.50588.1.S1_at11/1111+19643320..19646664patatin, putative, expressed
LOC_Os11g34380OsAffx.19153.1.S1_at11/1111+19647096..19647845hypothetical protein
LOC_Os11g34390OsAffx.31295.1.S1_at11/1111+19651224..19652722Glycosyltransferase 6, putative, expressed
LOC_Os11g34400Os.47130.4.A1_x_at1/1111+19655918..19656244retrotransposon protein, putative, unclassified
LOC_Os11g34410NANA11+19657235..19662874retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11992.1.S1_at--86--5991Chr11:19632326..19632350 (25 bp)
GAGACCCAACCAACTATAGGCCAAG
LOC_Os11g34350
Os.11992.1.S1_at--775--9851Chr11:19632403..19632427 (25 bp)
TACTACTACCTTGATGACTAATTTG
LOC_Os11g34350
Os.11992.1.S1_at--465--2951Chr11:19632428..19632554 (25 bp)
AAGGCGTACAGAATCTTCTTGTGGA
LOC_Os11g34350
Os.11992.1.S1_at--98--371Chr11:19632566..19632590 (25 bp)
ATAATTTGCCCAGGCCTTCGATGTC
LOC_Os11g34350
Os.11992.1.S1_at--1013--10611Chr11:19632582..19632606 (25 bp)
TTCGATGTCCTACGCATTACTTGTT
LOC_Os11g34350
Os.11992.1.S1_at--1094--5251Chr11:19632609..19632633 (25 bp)
GAAGGTTACTTTGAAGCTACCACAG
LOC_Os11g34350
Os.11992.1.S1_at--217--1571Chr11:19632623..19632647 (25 bp)
AGCTACCACAGCTTGAAGCATGCTA
LOC_Os11g34350
Os.11992.1.S1_at--339--5611Chr11:19632711..19632735 (25 bp)
GACACTTGAGTTCTTTTGCTGGTTT
LOC_Os11g34350
Os.11992.1.S1_at--318--5951Chr11:19632778..19632802 (25 bp)
GAGCAACTTTGTCAGGATCGGAAGA
LOC_Os11g34350
Os.11992.1.S1_at--80--6911Chr11:19632833..19632857 (25 bp)
GTATCGTGGATTTACCAACTGGCAC
LOC_Os11g34350
Os.11992.1.S1_at--621--3231Chr11:19632848..19632872 (25 bp)
CAACTGGCACCCTTAAATCGTTGGT
LOC_Os11g34350
Target Sequence 
GAGACCCAACCAACTATAGGCCAAGAATAAACAAACTGGACTCCACAAAAGACAGGGAACAAAAGTCTGCAGGATCCTAC
TACTACCTTGATGACTAATTTGAAGGCGTACAGAATCTTCTTGTGGAGCTTCCCGCCCATAATTTGCCCAGGCCTTCGAT
GTCCTACGCATTACTTGTTCAGAAGGTTACTTTGAAGCTACCACAGCTTGAAGCATGCTAAATAACTTGGCTGCAGGAGT
GAAGTGGTATCATCATCAGTTATAAGGCTGAGCATGTGATGCTGACACTTGAGTTCTTTTGCTGGTTTGATATATATGAT
GATGGGAAAGAGAGATGTTACTGTTAAACTGAGCAACTTTGTCAGGATCGGAAGATTGTGAATTTTTGTGTATTTTTGCA
TTATTGTATCGTGGATTTACCAACTGGCACCCTTAAATCGTTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11992.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis