Browse Element(s) Details


Os.16701.1.S1_at

Description gb:AK058845.1
DB_XREF= gi:32968863
TID=Os.16701.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16701 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-004-G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-004-G04, full insert sequence.
FL= gb:AK058845.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3431011/11Centromere/kinetochore protein zw10 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g34290Os.15833.1.S1_at3/1111+19583126..19593188retrotransposon protein, putative, unclassified
LOC_Os11g34290OsAffx.22699.1.S1_x_at3/1111+19583126..19593188retrotransposon protein, putative, unclassified
LOC_Os11g34290OsAffx.20631.1.S1_x_at3/1111+19583126..19593188retrotransposon protein, putative, unclassified
LOC_Os11g34290OsAffx.18275.1.S1_x_at1/1111+19583126..19593188retrotransposon protein, putative, unclassified
LOC_Os11g34290Os.49936.2.A1_at1/1111+19583126..19593188retrotransposon protein, putative, unclassified
LOC_Os11g34290Os.33601.3.S1_x_at1/1111+19583126..19593188retrotransposon protein, putative, unclassified
LOC_Os11g34300Os.7943.1.S1_a_at11/1111+19596795..19605549MRG family protein, putative, expressed
LOC_Os11g34300Os.7943.3.S1_s_at8/1111+19596795..19605549MRG family protein, putative, expressed
LOC_Os11g34300Os.39952.1.S1_at5/1111+19596795..19605549MRG family protein, putative, expressed
LOC_Os11g34300OsAffx.31293.1.S1_at1/1111+19596795..19605549MRG family protein, putative, expressed
LOC_Os11g34310Os.16701.1.S1_at11/1111+19608321..19612124Centromere/kinetochore protein zw10 homolog, putative, expressed
LOC_Os11g34320Os.53638.1.S1_at6/1111+19618171..19623872uvb-resistance protein uvr8, possible, putative, expressed
LOC_Os11g34330OsAffx.31294.1.S1_x_at11/1111+19624425..19625188hypothetical protein
LOC_Os11g34330OsAffx.31294.1.S1_at11/1111+19624425..19625188hypothetical protein
LOC_Os11g34340OsAffx.19152.1.S1_at11/1111+19626807..19627196hypothetical protein
LOC_Os11g34350Os.11992.1.S1_at11/1111+19627755..19633072ATP-binding cassette sub-family E member 1, putative, expressed
LOC_Os11g34360Os.7038.1.S1_at11/1111+19634956..19639326Lung seven transmembrane receptor family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007059biological_processchromosome segregation
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16701.1.S1_at--439--7491Chr11:19609200..19609224 (25 bp)
GTGGGAATCGATACTGCCAAGATCA
LOC_Os11g34310
Os.16701.1.S1_at--36--9011Chr11:19609001..19609025 (25 bp)
TGCAAGGTCTTATCCATTTGGCTCT
LOC_Os11g34310
Os.16701.1.S1_at--994--4811Chr11:19608981..19609005 (25 bp)
GCTCTTGAAAACCTCTCATCACTAT
LOC_Os11g34310
Os.16701.1.S1_at--1143--9671Chr11:19608963..19608987 (25 bp)
TCACTATTTCTGTCCCTGGTTGAGA
LOC_Os11g34310
Os.16701.1.S1_at--275--8091Chr11:19608767..19608790 (24 bp)
GGAGCTGCTTGATATGTCGTTGAAA
LOC_Os11g34310
Os.16701.1.S1_at--1105--8651Chr11:19608705..19608727 (23 bp)
TGTGGTTTCACATCGTCTGAGGTAC
LOC_Os11g34310
Os.16701.1.S1_at--274--231Chr11:19608501..19608525 (25 bp)
ATATTTGCGGATTCTCCTCTTAGGA
LOC_Os11g34310
Os.16701.1.S1_at--800--7931Chr11:19608461..19608485 (25 bp)
GGATTTCTAGGACACCATCTTAGGA
LOC_Os11g34310
Os.16701.1.S1_at--715--151Chr11:19608402..19608426 (25 bp)
ATTAGGCATCTTGTCATTGCCCTTC
LOC_Os11g34310
Os.16701.1.S1_at--874--71Chr11:19608387..19608411 (25 bp)
ATTGCCCTTCGTTTGTACAGATCTG
LOC_Os11g34310
Os.16701.1.S1_at--1144--1271Chr11:19608369..19608393 (25 bp)
AGATCTGGTTATGTTGTGCTTTGCA
LOC_Os11g34310
Target Sequence 
GTGGGAATCGATACTGCCAAGATCAATTTACAAGAGAAGTATGTGTTACATCCNTGGATCTGTCTTTTCTAGAATTACAA
AAGATATGCTCCTAATAGATGNNNNNNNNNNANAGGAGACATTACAGCTGCAAGGTCTTATCCATTTGGCTCTTGAAAAC
CTCTCATCACTATTTCTGTCCCTGGTTGAGAATGAGTTCTTGGACCATCAAACTTGGATCGAGTTGGATGAGATTATACG
ACCTTTGAAGAAGTTCCGGAAGCTAGCGGAGCTGCTTGATATGTCGTTGAAATCCATCACGGCCGCTTGGGAAAGTGGGG
AGTTAACTAATTGTGGTTTCACATCGTCTGAGGTACAAAATTTTGTCAAAGCAATATTTGCGGATTCTCCTCTTAGGAAG
GAGTGCCTATTATGGATTTCTAGGACACCATCTTAGGATGCAGAAATCAAACTATTTGTTCTTNACTGATTCATTAGGCA
TCTTGTCATTGCCCTTCGTTTGTACAGATCTGGTTATGTTGTGCTTTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16701.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis