Browse Element(s) Details


OsAffx.19152.1.S1_at

Description tigr:9639.m03093
TID=OsAffx.19152.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3434011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g34300Os.7943.1.S1_a_at11/1111+19596795..19605549MRG family protein, putative, expressed
LOC_Os11g34300Os.7943.3.S1_s_at8/1111+19596795..19605549MRG family protein, putative, expressed
LOC_Os11g34300Os.39952.1.S1_at5/1111+19596795..19605549MRG family protein, putative, expressed
LOC_Os11g34300OsAffx.31293.1.S1_at1/1111+19596795..19605549MRG family protein, putative, expressed
LOC_Os11g34310Os.16701.1.S1_at11/1111+19608321..19612124Centromere/kinetochore protein zw10 homolog, putative, expressed
LOC_Os11g34320Os.53638.1.S1_at6/1111+19618171..19623872uvb-resistance protein uvr8, possible, putative, expressed
LOC_Os11g34330OsAffx.31294.1.S1_x_at11/1111+19624425..19625188hypothetical protein
LOC_Os11g34330OsAffx.31294.1.S1_at11/1111+19624425..19625188hypothetical protein
LOC_Os11g34340OsAffx.19152.1.S1_at11/1111+19626807..19627196hypothetical protein
LOC_Os11g34350Os.11992.1.S1_at11/1111+19627755..19633072ATP-binding cassette sub-family E member 1, putative, expressed
LOC_Os11g34360Os.7038.1.S1_at11/1111+19634956..19639326Lung seven transmembrane receptor family protein, expressed
LOC_Os11g34370Os.50588.1.S1_at11/1111+19643320..19646664patatin, putative, expressed
LOC_Os11g34380OsAffx.19153.1.S1_at11/1111+19647096..19647845hypothetical protein
LOC_Os11g34390OsAffx.31295.1.S1_at11/1111+19651224..19652722Glycosyltransferase 6, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19152.1.S1_at--585--3931Chr11:19627141..19627165 (25 bp)
CGGCGGTGCTAGTGGTGAGCTGGAA
LOC_Os11g34340
OsAffx.19152.1.S1_at--721--1611Chr11:19627124..19627148 (25 bp)
AGCTGGAAGCATGAGCTGGTGTCAC
LOC_Os11g34340
OsAffx.19152.1.S1_at--687--1531Chr11:19627117..19627141 (25 bp)
AGCATGAGCTGGTGTCACGGCTACA
LOC_Os11g34340
OsAffx.19152.1.S1_at--547--5891Chr11:19627112..19627136 (25 bp)
GAGCTGGTGTCACGGCTACAGTTAA
LOC_Os11g34340
OsAffx.19152.1.S1_at--453--7431Chr11:19627106..19627130 (25 bp)
GTGTCACGGCTACAGTTAAGTCCTA
LOC_Os11g34340
OsAffx.19152.1.S1_at--185--3731Chr11:19627097..19627121 (25 bp)
CTACAGTTAAGTCCTAGCTTCCACT
LOC_Os11g34340
OsAffx.19152.1.S1_at--685--10491Chr11:19627091..19627115 (25 bp)
TTAAGTCCTAGCTTCCACTTTGTGC
LOC_Os11g34340
OsAffx.19152.1.S1_at--466--10011Chr11:19627083..19627107 (25 bp)
TAGCTTCCACTTTGTGCCGACGGAC
LOC_Os11g34340
OsAffx.19152.1.S1_at--786--2031Chr11:19627075..19627099 (25 bp)
ACTTTGTGCCGACGGACAAGGAGCT
LOC_Os11g34340
OsAffx.19152.1.S1_at--936--9211Chr11:19626871..19627066 (25 bp)
TCCACCTCCGCGAAATACAAGGGCT
LOC_Os11g34340
OsAffx.19152.1.S1_at--1039--7591Chr11:19626843..19626867 (25 bp)
GGGAAGGTATGTGGTACTTTTTCAT
LOC_Os11g34340
Target Sequence 
CGGCGGTGCTAGTGGTGAGCTGGAAGCATGAGCTGGTGTCACGGCTACAGTTAAGTCCTAGCTTCCACTTTGTGCCGACG
GACAAGGAGCTCGTGGACTTCCACCTCCGCGAAATACAAGGGCTATGGGGAAGGTATGTGGTACTTTTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19152.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis