Browse Element(s) Details


Os.40410.1.A1_s_at

Description gb:CF332870
DB_XREF= gi:33813964
DB_XREF=JMT--01-I18.g1
CLONE=JMT--01-I18
TID=Os.40410.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.40410 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_172318.1 (A.thaliana) protein serinethreonine phosphatase alpha, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4450011/11kelch repeat-containing serine/threonine phosphoesterase family protein, putative, expressed
LOC_Os09g062301/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g44460OsAffx.32166.1218.S1_x_at3/113+24975872..24976942expressed protein
LOC_Os03g44470NANA3+24978534..24983551retrotransposon protein, putative, unclassified
LOC_Os03g44484Os.53782.1.S1_at11/113+24987908..24996309DNA-directed RNA polymerase II 135 kDa polypeptide, putative, expressed
LOC_Os03g44484OsAffx.25537.1.S1_x_at11/113+24987908..24996309DNA-directed RNA polymerase II 135 kDa polypeptide, putative, expressed
LOC_Os03g44484Os.25542.1.S1_at10/113+24987908..24996309DNA-directed RNA polymerase II 135 kDa polypeptide, putative, expressed
LOC_Os03g44500Os.40410.1.A1_s_at11/113+24996520..25005272kelch repeat-containing serine/threonine phosphoesterase family protein, putative, expressed
LOC_Os03g44510NANA3+25007771..25011029transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g44520Os.53631.1.S1_at11/113+25015671..25016551expressed protein
LOC_Os03g44530Os.54360.1.S1_at11/113+25017367..25020869expressed protein
LOC_Os03g44530Os.48238.1.S1_x_at9/113+25017367..25020869expressed protein
LOC_Os03g44540Os.54660.1.S1_at11/113+25023300..25028891CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os03g44540OsAffx.31294.1.S1_x_at2/113+25023300..25028891CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os03g44540OsAffx.31294.1.S1_at1/113+25023300..25028891CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os03g44544NANA3+25028842..25030099hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006470biological_processprotein amino acid dephosphorylation
GO:0000164cellular_componentprotein phosphatase type 1 complex
GO:0000163molecular_functionprotein phosphatase type 1 activity
GO:0004672molecular_functionprotein kinase activity
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40410.1.A1_s_at--49--9471Chr03:24996961..24996985 (25 bp)
TCTGGAGATCGACGAGGCTTCACTT
LOC_Os03g44500
Os.40410.1.A1_s_at--237--6891Chr03:24996931..24996955 (25 bp)
GTATATACTCGGCTGCTGGTGGATA
LOC_Os03g44500
Os.40410.1.A1_s_at--9--3451Chr03:24996904..24996928 (25 bp)
CAGTTGTATGTGGTTTTTGCATCCA
LOC_Os03g44500
Os.40410.1.A1_s_at--366--51Chr03:24996852..24996876 (25 bp)
ATTGTACTAGCTATTCTTTCCTCTC
LOC_Os03g44500
Os.40410.1.A1_s_at--1083--6051Chr03:24996797..24996821 (25 bp)
GAGTTCTGATTTTGCAAGGTGCTTC
LOC_Os03g44500
Os.40410.1.A1_s_at--820--3211Chr03:24996783..24996807 (25 bp)
CAAGGTGCTTCTGAACTGCTGGAGA
LOC_Os03g44500
Os.40410.1.A1_s_at--926--7411Chr03:24996744..24996768 (25 bp)
GTGTTCGTGGTCCAGTCGTGTATAA
LOC_Os03g44500
Os.40410.1.A1_s_at--246--3451Chr03:24996732..24996756 (25 bp)
CAGTCGTGTATAATAGCCTTCCCTC
LOC_Os03g44500
Os.40410.1.A1_s_at--730--9251Chr03:24996709..24996733 (25 bp)
TCCTGCTACTTTCGTCGCAGCATAC
LOC_Os03g44500
Os.40410.1.A1_s_at--694--1311Chr03:24996589..24996613 (25 bp)
AGATGTGGTGTTACTCATGGTGGTT
LOC_Os03g44500
Os.40410.1.A1_s_at--112--432Chr09:2914884..2914949 (25 bp)
ATCTTGTTTGGCTCCGAATTGAATT
LOC_Os09g06230
Target Sequence 
TCTGGAGATCGACGAGGCTTCACTTCCCTTGTATATACTCGGCTGCTGGTGGATAGGCAGTTGTATGTGGTTTTTGCATC
CAATTGGAATGGCAAAAAGGAATAGTGTTATTGTACTAGCTATTCTTTCCTCTCTTTTTTTTTTCCTTTCTTTTTGGGAT
CTAGAGTTCTGATTTTGCAAGGTGCTTCTGAACTGCTGGAGAGAGACCGATGGCTGGTGTTCGTGGTCCAGTCGTGTATA
ATAGCCTTCCCTCCTGCTACTTTCGTCGCAGCATACCCCNTTGTAATTTCAGTCTGATGATGCTGATGTACAATTTTGTG
TTCAAGTTTNGNNTGNNGNANNNNNNNTGATTTGGTTTACTNNNAGGAGAGAGATGTGGTGTTACTCATGGTGGTTGNAC
AAAAATTCAATTANATCTTGTTTGGCTCCGAATTGAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40410.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis