Browse Element(s) Details


OsAffx.25539.1.S1_at

Description tigr:9631.m04314
TID=OsAffx.25539.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc finger, C3HC4 type (RING finger), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4463611/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g44590NANA3+25061381..25064807transposon protein, putative, Mutator sub-class
LOC_Os03g44600OsAffx.27271.1.S1_at11/113+25065210..25065793hypothetical protein
LOC_Os03g44610Os.9033.1.S1_at10/113+25070355..25078460IQ calmodulin-binding motif family protein, expressed
LOC_Os03g44620Os.46241.1.S1_s_at11/113+25081435..25085183DnaJ protein homolog, putative, expressed
LOC_Os03g44620Os.46241.2.S1_s_at11/113+25081435..25085183DnaJ protein homolog, putative, expressed
LOC_Os03g44630Os.55267.1.S1_at11/113+25085236..25085992Plastocyanin-like domain containing protein, expressed
LOC_Os03g44636OsAffx.25539.1.S1_at11/113+25089731..25090282Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g44642NANA3+25091335..25091829Zinc finger, C3HC4 type family protein
LOC_Os03g44650OsAffx.13346.1.S1_at11/113+25093821..25094795Glutaredoxin family protein
LOC_Os03g44660Os.16447.1.S1_at11/113+25096714..25100593Pyrimidine 5'-nucleotidase family protein, expressed
LOC_Os03g44670Os.7277.1.S1_s_at11/113+25101804..25105719expressed protein
LOC_Os03g44680OsAffx.25541.1.S1_at11/113+25109139..25109573hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25539.1.S1_at--93--1871Chr03:25089888..25089912 (25 bp)
ACGACGATGTCGAGAGCGCGCTCGG
LOC_Os03g44636
OsAffx.25539.1.S1_at--578--1711Chr03:25089920..25089944 (25 bp)
ACCACGGTCACGACGTACGAGCAGG
LOC_Os03g44636
OsAffx.25539.1.S1_at--639--2171Chr03:25089999..25090023 (25 bp)
ACACGTGCGCGATCTGCTGTCAGGA
LOC_Os03g44636
OsAffx.25539.1.S1_at--292--7291Chr03:25090003..25090027 (25 bp)
GTGCGCGATCTGCTGTCAGGAATAC
LOC_Os03g44636
OsAffx.25539.1.S1_at--888--4731Chr03:25090014..25090038 (25 bp)
GCTGTCAGGAATACTCCGGCGCCGA
LOC_Os03g44636
OsAffx.25539.1.S1_at--552--7491Chr03:25090052..25090076 (25 bp)
GTGGTGCGGTGCAGCCATTTCTTCC
LOC_Os03g44636
OsAffx.25539.1.S1_at--819--4651Chr03:25090086..25090110 (25 bp)
GCGTCGACGGTTGGCTCCGGGAGAA
LOC_Os03g44636
OsAffx.25539.1.S1_at--604--7631Chr03:25090104..25090128 (25 bp)
GGGAGAAGCGGAATTGCCCGCTGTG
LOC_Os03g44636
OsAffx.25539.1.S1_at--485--4411Chr03:25090216..25090240 (25 bp)
GCCACCGTTGTCGTCGGCTAATTAC
LOC_Os03g44636
OsAffx.25539.1.S1_at--623--6631Chr03:25090222..25090246 (25 bp)
GTTGTCGTCGGCTAATTACTTATCA
LOC_Os03g44636
OsAffx.25539.1.S1_at--501--7191Chr03:25090228..25090252 (25 bp)
GTCGGCTAATTACTTATCAGGATTT
LOC_Os03g44636
Target Sequence 
ACGACGATGTCGAGAGCGCGCTCGGGGGCGCCACCACGGTCACGACGTACGAGCAGGCGGCGGCGGCGTCGTCGTCTTCG
CCGGCGGCAGGGGCAGCGGCGGAGGGAGCGGACACGTGCGCGATCTGCTGTCAGGAATACTCCGGCGCCGACAAGGTGCG
GCGGGTGGTGCGGTGCAGCCATTTCTTCCACGCGGGGTGCGTCGACGGTTGGCTCCGGGAGAAGCGGAATTGCCCGCTGT
GCCGCGCCGTGCTGTCGTCGTTGCCGCCGCTTCCCAACCCTGGCTGCCGCCGCGGACGAGCCGCCCCGCCGTGTCCGCCG
CCGCTGCCGCCACCGTTGTCGTCGGCTAATTACTTATCAGGATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25539.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis