Browse Element(s) Details


Os.7277.1.S1_s_at

Description gb:CB672166
DB_XREF= gi:29675891
DB_XREF=OSJNEe06B01.r
CLONE=OSJNEe06B01
TID=Os.7277.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.7277 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_187782.1 (A.thaliana) unknown protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4467011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g44610Os.9033.1.S1_at10/113+25070355..25078460IQ calmodulin-binding motif family protein, expressed
LOC_Os03g44620Os.46241.1.S1_s_at11/113+25081435..25085183DnaJ protein homolog, putative, expressed
LOC_Os03g44620Os.46241.2.S1_s_at11/113+25081435..25085183DnaJ protein homolog, putative, expressed
LOC_Os03g44630Os.55267.1.S1_at11/113+25085236..25085992Plastocyanin-like domain containing protein, expressed
LOC_Os03g44636OsAffx.25539.1.S1_at11/113+25089731..25090282Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g44642NANA3+25091335..25091829Zinc finger, C3HC4 type family protein
LOC_Os03g44650OsAffx.13346.1.S1_at11/113+25093821..25094795Glutaredoxin family protein
LOC_Os03g44660Os.16447.1.S1_at11/113+25096714..25100593Pyrimidine 5'-nucleotidase family protein, expressed
LOC_Os03g44670Os.7277.1.S1_s_at11/113+25101804..25105719expressed protein
LOC_Os03g44680OsAffx.25541.1.S1_at11/113+25109139..25109573hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7277.1.S1_s_at--221--1351Chr03:25102272..25102296 (25 bp)
AGAGTTTCTTGGCAGCCATCCCAAT
LOC_Os03g44670
Os.7277.1.S1_s_at--857--9031Chr03:25102197..25102221 (25 bp)
TGCACCACCGGCTTCAAATAGAGTT
LOC_Os03g44670
Os.7277.1.S1_s_at--792--9851Chr03:25102168..25102192 (25 bp)
TACACTGCATCATCCCCAAAGGAGA
LOC_Os03g44670
Os.7277.1.S1_s_at--547--1771Chr03:25102079..25102103 (25 bp)
ACCGGCAATGGAGATCGCGCTAGCA
LOC_Os03g44670
Os.7277.1.S1_s_at--867--4731Chr03:25102051..25102075 (25 bp)
GCTGTTGCTGTTGTATAGCTTCCTG
LOC_Os03g44670
Os.7277.1.S1_s_at--495--10671Chr03:25102032..25102056 (25 bp)
TTCCTGATGGTGATCTGTCCTGACA
LOC_Os03g44670
Os.7277.1.S1_s_at--891--1131Chr03:25102005..25102029 (25 bp)
AGTCCACTGCATGCATACTTGCTGG
LOC_Os03g44670
Os.7277.1.S1_s_at--144--10411Chr03:25101977..25102001 (25 bp)
TTTTGTGTCCTTTATGTTTGCGCTC
LOC_Os03g44670
Os.7277.1.S1_s_at--702--4571Chr03:25101958..25101982 (25 bp)
GCGCTCGTATCCTGCCTAATATGAA
LOC_Os03g44670
Os.7277.1.S1_s_at--380--10251Chr03:25101917..25101941 (25 bp)
TTTGTCCAGGCCTAGGAGCTTTCTG
LOC_Os03g44670
Os.7277.1.S1_s_at--107--3231Chr03:25101848..25101872 (25 bp)
CAAGTGCCGGATTTGTAACCATCAA
LOC_Os03g44670
Target Sequence 
AGAGTTTCTTGGCAGCCATCCCAATCCGGGAACTACAGGTTGACATCAAGAAAGGCCTGATGGCGTCGACGCCATTGCAC
CACCGGCTTCAAATAGAGTTCCACTACACTGCATCATCCCCAAAGGAGATTACCTCAGCCCNTCAAATTCTAACCATCGA
AGCCCNTTTTGAGTTCTCATGGCCTGAGCCACCACCGGCAATGGAGATCGCGCTAGCACCAGCTGTTGCTGTTGTATAGC
TTCCTGATGGTGATCTGTCCTGACATCAGTCCACTGCATGCATACTTGCTGGAGATTTTGTGTCCTTTATGTTTGCGCTC
GTATCCTGCCTAATATGAACTAACTACTATAGGTTTTTGTCCAGGCCTAGGAGCTTTCTGCCTGCATTTTGTATAAATAG
GTGTTTGCTCCTACATATTTTTCTCAAGTGCCGGATTTGTAACCATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7277.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis