Browse Element(s) Details


Os.53446.1.S1_at

Description gb:AK072670.1
DB_XREF= gi:32982693
TID=Os.53446.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53446 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023136B13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023136B13, full insert sequence.
FL= gb:AK072670.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1041011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g10360OsAffx.31681.1.S1_at11/1112+5485083..5487011NB-ARC domain containing protein
LOC_Os12g10370OsAffx.19590.1.S1_at11/1112+5488242..5488692hypothetical protein
LOC_Os12g10380NANA12+5496679..5497035hypothetical protein
LOC_Os12g10390OsAffx.31681.1.S1_at11/1112+5497827..5499710NB-ARC domain containing protein
LOC_Os12g10400OsAffx.31682.1.S1_at11/1112+5500645..5505129NB-ARC domain containing protein
LOC_Os12g10410Os.53446.1.S1_at11/1112+5507791..5513984NB-ARC domain containing protein, expressed
LOC_Os12g10410OsAffx.25541.1.S1_at1/1112+5507791..5513984NB-ARC domain containing protein, expressed
LOC_Os12g10420OsAffx.18200.1.S1_at1/1112+5521618..5523731retrotransposon protein, putative, unclassified
LOC_Os12g10430OsAffx.22699.1.S1_x_at1/1112+5523867..5528355retrotransposon protein, putative, unclassified
LOC_Os12g10440OsAffx.29073.1.S1_x_at8/1112+5529193..5535753hypothetical protein
LOC_Os12g10440Os.46610.1.A1_x_at2/1112+5529193..5535753hypothetical protein
LOC_Os12g10450OsAffx.31683.1.S1_at11/1112+5537961..5538999hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0006952biological_processdefense response
GO:0009598biological_processdetection of pathogenic bacteria
GO:0009626biological_processhypersensitive response
GO:0005622cellular_componentintracellular
GO:0005886cellular_componentplasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53446.1.S1_at--411--2451Chr12:5508287..5508311 (25 bp)
AAAATTGACGCACGCCACATGGGTA
LOC_Os12g10410
Os.53446.1.S1_at--146--71Chr12:5508263..5508287 (25 bp)
ATTGCAGCTTGGGTACCTCGAGGAA
LOC_Os12g10410
Os.53446.1.S1_at--195--6591Chr12:5508226..5508250 (25 bp)
GATTGCCCACAGTTTAAACGGTTGA
LOC_Os12g10410
Os.53446.1.S1_at--992--451Chr12:5508141..5508165 (25 bp)
ATCTCGATCTCAGTGATCTGCCAGA
LOC_Os12g10410
Os.53446.1.S1_at--26--7191Chr12:5508113..5508137 (25 bp)
GTCTGATATATGTGTGCTGCCTTGT
LOC_Os12g10410
Os.53446.1.S1_at--519--7351Chr12:5508090..5508114 (25 bp)
GTGAATTTAAGTCGTCGCTGGCGCT
LOC_Os12g10410
Os.53446.1.S1_at--1106--9311Chr12:5508076..5508100 (25 bp)
TCGCTGGCGCTTCTTGTTGAGAACT
LOC_Os12g10410
Os.53446.1.S1_at--794--411Chr12:5507941..5507965 (25 bp)
ATCATGAAGTCCTACCTATCGCAAA
LOC_Os12g10410
Os.53446.1.S1_at--1057--3111Chr12:5507868..5507892 (25 bp)
AATTTGTTATTTCTCTCGTGGTGTG
LOC_Os12g10410
Os.53446.1.S1_at--470--9511Chr12:5507855..5507879 (25 bp)
TCTCGTGGTGTGATCTGGCAGCAAG
LOC_Os12g10410
Os.53446.1.S1_at--281--9171Chr12:5507829..5507853 (25 bp)
TGCCCACGAGCATTCTATACTATAC
LOC_Os12g10410
Target Sequence 
AAAATTGACGCACGCCACATGGGTATTGCAGCTTGGGTACCTCGAGGAACTCGGCATTCATGATTGCCCACAGTTTAAAC
GGTTGATCGACCATAAGGAGCTTGCGGAGAATCCACCAGATCATGTGATCTTCCCTCGGCTTACATATCTCGATCTCAGT
GATCTGCCAGAATTGTCTGATATATGTGTGCTGCCTTGTGAATTTAAGTCGTCGCTGGCGCTTCTTGTTGAGAACTGCGA
CAAGCTGATGAACATATCGTTCCACTACCCACCCGGTCATGACCAGAAAAATATTAGGGTTTTCTGCGACAATGAATGGT
TCAATAGACTCGAGTGCAAGCCAAATATCATGAAGTCCTACCTATCGCAAAACATGAGATTTTCTGCTATTTGAAGATTG
TTTTATCTGTACAGCTGAAAATTTGTTATTTCTCTCGTGGTGTGATCTGGCAGCAAGATGCCCACGAGCATTCTATACTA
TAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53446.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis