Browse Element(s) Details


Os.48871.1.A1_at

Description gb:CB672461
DB_XREF= gi:29676186
DB_XREF=OSJNEe06I03.r
CLONE=OSJNEe06I03
TID=Os.48871.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.48871 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T02497 (A.thaliana) T02497 hypothetical protein T19C21.3 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2779011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g27740OsAffx.27046.1.S1_at11/115+16078284..16081517hypothetical protein
LOC_Os05g27740Os.23623.1.A1_at1/115+16078284..16081517hypothetical protein
LOC_Os05g27749OsAffx.27053.1.S1_at11/115+16083470..16084687hypothetical protein
LOC_Os05g27760OsAffx.27054.1.S1_at11/115+16089380..16090042hypothetical protein
LOC_Os05g27770NANA5+16094038..16098387retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g27780Os.37909.1.S1_at11/115+16100403..16101538expressed protein
LOC_Os05g27780Os.25952.1.S1_at11/115+16100403..16101538expressed protein
LOC_Os05g27790Os.48871.1.A1_at11/115+16105976..16108654expressed protein
LOC_Os05g27800OsAffx.4447.1.S1_at11/115+16124622..16125050expressed protein
LOC_Os05g27810OsAffx.14854.1.S1_at10/115+16131037..16132524hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48871.1.A1_at--508--9851Chr05:16106530..16106554 (25 bp)
TACAATGCACGCTAAAACACTAATG
LOC_Os05g27790
Os.48871.1.A1_at--802--6251Chr05:16106271..16106295 (25 bp)
GATGGGATCCATCCATGTCGATCGC
LOC_Os05g27790
Os.48871.1.A1_at--793--6371Chr05:16106238..16106262 (25 bp)
GATCCTGTTATTTGTACAGCTAGTT
LOC_Os05g27790
Os.48871.1.A1_at--291--6551Chr05:16106213..16106237 (25 bp)
GATTGTTGGTTTCTTCATAGTGGTG
LOC_Os05g27790
Os.48871.1.A1_at--586--711Chr05:16106185..16106209 (25 bp)
ATGATGTGGTATACTCGTGTGGTAC
LOC_Os05g27790
Os.48871.1.A1_at--1086--311Chr05:16106175..16106199 (25 bp)
ATACTCGTGTGGTACATACGTACAC
LOC_Os05g27790
Os.48871.1.A1_at--281--7011Chr05:16106156..16106180 (25 bp)
GTACACGTACGGCTTTGTTTCTTGT
LOC_Os05g27790
Os.48871.1.A1_at--502--211Chr05:16106129..16106153 (25 bp)
ATATTTGGGACTGGAATCGGCCGGT
LOC_Os05g27790
Os.48871.1.A1_at--855--51Chr05:16106075..16106099 (25 bp)
ATTGATCGATTCATTTCATTGGATG
LOC_Os05g27790
Os.48871.1.A1_at--464--3611Chr05:16106059..16106083 (25 bp)
CATTGGATGATTTGATTGTCTTGCA
LOC_Os05g27790
Os.48871.1.A1_at--127--7151Chr05:16106042..16106066 (25 bp)
GTCTTGCATGTGTTTAATTAGGCGT
LOC_Os05g27790
Target Sequence 
TACAATGCACGCTAAAACACTAATGNNNNANNGTNGNNNNNNNNNNNANNTNGNNNNANNNCAGGTGACGGCGTACCTGC
TGATGTCGGCGGTGTCGGCGGCGATCCCGATAACGAACAGGATGAGGGAAGGCGCGGACAACGTGTTCANCGANTNNTCG
GCGGCGTCCATCAGCATGGCCTTNTTNGCNTTCCTNNGCCTNGCCCTNTCCGCCNTCGTNTCCGGCTTCAAGNTCGCCAA
GCAGACCTACATCNGATNTGATGGGATCCATCCATGTCGATCGCCGTCGTCNGATCCTGTTATTTGTACAGCTAGTTGAT
TGTTGGTTTCTTCATAGTGGTGGTGATGATGTGGTATACTCGTGTGGTACATACGTACACGTACGGCTTTGTTTCTTGTT
TATATTTGGGACTGGAATCGGCCGGTGGGGTTAATTTGCGTGTTTAGGGGAGGATATTGATCGATTCATTTCATTGGATG
ATTTGATTGTCTTGCATGTGTTTAATTAGGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48871.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis