Browse Element(s) Details


OsAffx.14854.1.S1_at

Description tigr:9633.m02535
TID=OsAffx.14854.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2781010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g27790Os.48871.1.A1_at11/115+16105976..16108654expressed protein
LOC_Os05g27800OsAffx.4447.1.S1_at11/115+16124622..16125050expressed protein
LOC_Os05g27810OsAffx.14854.1.S1_at10/115+16131037..16132524hypothetical protein
LOC_Os05g27820OsAffx.14855.1.S1_at11/115+16138396..16141993CRAL/TRIO, N-terminus family protein, expressed
LOC_Os05g27830OsAffx.14856.1.S1_at11/115+16149594..16149977hypothetical protein
LOC_Os05g27840NANA5+16151336..16152927retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14854.1.S1_at--881--4131NONE
CGCTCCCCGGAAAGTGTGCATGGAA
NONE
OsAffx.14854.1.S1_at--2--5931Chr05:16131957..16131981 (25 bp)
GAGAAAAGAACACACCACGAAGAAG
LOC_Os05g27810
OsAffx.14854.1.S1_at--1160--2731Chr05:16131976..16132000 (25 bp)
AAGAAGTTGTTCAACGTCCTGCTCC
LOC_Os05g27810
OsAffx.14854.1.S1_at--371--9211Chr05:16132068..16132092 (25 bp)
TCCACTTTGAAGATTCCCAGCGACG
LOC_Os05g27810
OsAffx.14854.1.S1_at--677--1251Chr05:16132078..16132102 (25 bp)
AGATTCCCAGCGACGTTGATCTCTT
LOC_Os05g27810
OsAffx.14854.1.S1_at--686--6391Chr05:16132095..16132119 (25 bp)
GATCTCTTCCGTGCCCAAGTGAGGA
LOC_Os05g27810
OsAffx.14854.1.S1_at--654--4551Chr05:16132107..16132131 (25 bp)
GCCCAAGTGAGGAACGCGGAGTCAA
LOC_Os05g27810
OsAffx.14854.1.S1_at--1119--3951Chr05:16132123..16132147 (25 bp)
CGGAGTCAAAGTTGGTCGCGCGTTC
LOC_Os05g27810
OsAffx.14854.1.S1_at--323--6631Chr05:16132133..16132154 (22 bp)
GTTGGTCGCGCGTTCCTCATCAAGA
LOC_Os05g27810
OsAffx.14854.1.S1_at--985--9951Chr05:16132237..16132261 (25 bp)
TACCCGGGAGCTATCATCACCATCG
LOC_Os05g27810
OsAffx.14854.1.S1_at--352--4011Chr05:16132353..16132377 (25 bp)
CGTCCGAGAGTTGAGAGGCTCCAGC
LOC_Os05g27810
Target Sequence 
CGCTCCCCGGAAAGTGTGCATGGAAAAGATAAGAAAGCAGAAGTTAGGAAAAGAGAGAAAAGAACACACCACGAAGAAGT
TGTTCAACGTCCTGCTCCTACAGCCCCAGCCTTCCACTTTGAAGATTCCCAGCGACGTTGATCTCTTCCGTGCCCAAGTG
AGGAACGCGGAGTCAAAGTTGGTCGCGCGTTCCTCATCAAGAGAACATAGTGGCTGGGGCGGAGAAAGAGGGAACGAGGC
GAGGGGGCGGCCCTACCCGGGAGCTATCATCACCATCGTCTTCGAGCTGCCACCGCTGTGCCGGATCTGGAGAGCTTCGT
GGAGGGAGAAGCGGCCGCCACCACGAGCCGTCGAGCTGTGCTCGAGCGGCGTCCGAGAGTTGAGAGGCTCCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14854.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis