Browse Element(s) Details


OsAffx.14856.1.S1_at

Description tigr:9633.m02537
TID=OsAffx.14856.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2783011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g27800OsAffx.4447.1.S1_at11/115+16124622..16125050expressed protein
LOC_Os05g27810OsAffx.14854.1.S1_at10/115+16131037..16132524hypothetical protein
LOC_Os05g27820OsAffx.14855.1.S1_at11/115+16138396..16141993CRAL/TRIO, N-terminus family protein, expressed
LOC_Os05g27830OsAffx.14856.1.S1_at11/115+16149594..16149977hypothetical protein
LOC_Os05g27840NANA5+16151336..16152927retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g27850NANA5+16159363..16162457transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27860Os.47463.1.S1_x_at5/115+16164514..16167734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27860Os.14491.2.S1_x_at4/115+16164514..16167734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27870Os.7084.1.S1_at11/115+16174911..16186966expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14856.1.S1_at--477--2651Chr05:16149808..16149832 (25 bp)
AACCACTCAGGTCATGCTCTATCGA
LOC_Os05g27830
OsAffx.14856.1.S1_at--64--7831Chr05:16149817..16149841 (25 bp)
GGTCATGCTCTATCGAGATTGCCAA
LOC_Os05g27830
OsAffx.14856.1.S1_at--783--10091Chr05:16149827..16149851 (25 bp)
TATCGAGATTGCCAACTACCTCAGC
LOC_Os05g27830
OsAffx.14856.1.S1_at--638--4771Chr05:16149850..16149874 (25 bp)
GCTCCTCAGAAGACAGCTTTTACCC
LOC_Os05g27830
OsAffx.14856.1.S1_at--416--9651Chr05:16149855..16149879 (25 bp)
TCAGAAGACAGCTTTTACCCCAACA
LOC_Os05g27830
OsAffx.14856.1.S1_at--82--1551Chr05:16149864..16149888 (25 bp)
AGCTTTTACCCCAACACTGAGATTG
LOC_Os05g27830
OsAffx.14856.1.S1_at--704--10451Chr05:16149869..16149893 (25 bp)
TTACCCCAACACTGAGATTGCAGAT
LOC_Os05g27830
OsAffx.14856.1.S1_at--516--6591Chr05:16149884..16149908 (25 bp)
GATTGCAGATGGATTTGACTTCGAC
LOC_Os05g27830
OsAffx.14856.1.S1_at--80--6251Chr05:16149891..16149915 (25 bp)
GATGGATTTGACTTCGACAACGATT
LOC_Os05g27830
OsAffx.14856.1.S1_at--751--6513Chr05:16149912..16149936 (25 bp)
GATTTGTTAACAACGGAATTTCGCA
LOC_Os05g27830
OsAffx.14856.1.S1_at--173--2171Chr05:16149923..16149947 (25 bp)
AACGGAATTTCGCATCAGATTCGGA
LOC_Os05g27830
Target Sequence 
AACCACTCAGGTCATGCTCTATCGAGATTGCCAACTACCTCAGCTCCTCAGAAGACAGCTTTTACCCCAACACTGAGATT
GCAGATGGATTTGACTTCGACAACGATTTGTTAACAACGGAATTTCGCATCAGATTCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14856.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis