Browse Element(s) Details


Os.7084.1.S1_at

Description gb:AK073748.1
DB_XREF= gi:32983771
TID=Os.7084.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7084 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033094L12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033066L16, full insert sequence.
FL= gb:AK102482.1 gb:AK073748.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2787011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g27830OsAffx.14856.1.S1_at11/115+16149594..16149977hypothetical protein
LOC_Os05g27840NANA5+16151336..16152927retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g27850NANA5+16159363..16162457transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27860Os.47463.1.S1_x_at5/115+16164514..16167734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27860Os.14491.2.S1_x_at4/115+16164514..16167734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27870Os.7084.1.S1_at11/115+16174911..16186966expressed protein
LOC_Os05g27880Os.6000.3.S1_x_at11/115+16189305..16195798BTB/POZ domain containing protein, expressed
LOC_Os05g27880Os.6000.2.S1_at11/115+16189305..16195798BTB/POZ domain containing protein, expressed
LOC_Os05g27880Os.6000.1.S1_at11/115+16189305..16195798BTB/POZ domain containing protein, expressed
LOC_Os05g27890Os.50475.1.S1_at11/115+16198490..16202163expressed protein
LOC_Os05g27900OsAffx.27048.1.S1_at11/115+16205034..16205498hypothetical protein
LOC_Os05g27910OsAffx.27049.1.S1_at11/115+16206606..16207526hypothetical protein
LOC_Os05g27920Os.10964.1.S1_at10/115+16211369..16218543phox domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7084.1.S1_at--769--5851Chr05:16175480..16175504 (25 bp)
GAGCGACCAAATGTACCTCGGTTGC
LOC_Os05g27870
Os.7084.1.S1_at--481--6971Chr05:16175468..16175492 (25 bp)
GTACCTCGGTTGCAGGCGATTCAAA
LOC_Os05g27870
Os.7084.1.S1_at--859--1971Chr05:16175418..16175442 (25 bp)
ACTCCGCAGTGTTCAATCCTGGTTA
LOC_Os05g27870
Os.7084.1.S1_at--54--2731Chr05:16175280..16175304 (25 bp)
AAGACATAACCCTGAACTCGGCGAA
LOC_Os05g27870
Os.7084.1.S1_at--1078--2111Chr05:16175234..16175258 (25 bp)
ACATGGAGTTCTGCTGGTGTGGTCA
LOC_Os05g27870
Os.7084.1.S1_at--599--2351Chr05:16175145..16175169 (25 bp)
AAAGCTGCTTGCTTCAGTATCGGCT
LOC_Os05g27870
Os.7084.1.S1_at--425--9651Chr05:16175132..16175156 (25 bp)
TCAGTATCGGCTTCTCTATCATCGG
LOC_Os05g27870
Os.7084.1.S1_at--344--4491Chr05:16175022..16175046 (25 bp)
GCCGTCCATTCTTTACTTTGTTTCT
LOC_Os05g27870
Os.7084.1.S1_at--1131--3772Chr03:11690087..11690145 (25 bp)
CTCTGTTTTGCATTTCTCCATTTTT
NONE
Os.7084.1.S1_at--689--171Chr05:16174944..16174968 (25 bp)
ATTTTTTACTGCCATTGCTGGTCAC
LOC_Os05g27870
Os.7084.1.S1_at--1150--4711Chr05:16174928..16174952 (25 bp)
GCTGGTCACGCATTCTTTTGGAAGT
LOC_Os05g27870
Target Sequence 
GAGCGACCAAATGTACCTCGGTTGCAGGCGATTCAAAGATCTGTGCAGTGCATGATCGACACACTCCGCAGTGTTCAATC
CTGGTTATCTGACCAGATGAGGCCGGAGGAGCAAGCTTTGGATATTTTGTTGTCATATTTGCAAGGAGGTAATGAGGATG
GGCCAGGACAGATATCCTGTATCTTGGAGGAGAATTCAGCAAGACATAACCCTGAACTCGGCGAACGGATTGCTCAATCT
TTGGAAACATGGAGTTCTGCTGGTGTGGTCAGAAGAATCGTTGGAGCAGAGAAGGAGCTGTTAGTTGAGTTAAAGAAAAT
ATGCGACTCAAAACTAAAGCTGCTTGCTTCAGTATCGGCTTCTCTATCATCGGCCTTACATTGAAATTGAAAAATTTTGC
TCGTGAATTTTGTTCCANTTGTTGTGACATATGTTGTGAGTGTAACTGTTTGGCTTTGCGCCGTCCATTCTTTACTTTGT
TTCTATGAGATTTTGCTGGAGTGATCCCTGCTTCTCCCCTCTGTTTTGCATTTCTCCATTTTTTACTGCCATTGCTGGTC
ACGCATTCTTTTGGAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7084.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis