Browse Element(s) Details


OsAffx.27049.1.S1_at

Description tigr:9633.m02546
TID=OsAffx.27049.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2791011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g27870Os.7084.1.S1_at11/115+16174911..16186966expressed protein
LOC_Os05g27880Os.6000.3.S1_x_at11/115+16189305..16195798BTB/POZ domain containing protein, expressed
LOC_Os05g27880Os.6000.2.S1_at11/115+16189305..16195798BTB/POZ domain containing protein, expressed
LOC_Os05g27880Os.6000.1.S1_at11/115+16189305..16195798BTB/POZ domain containing protein, expressed
LOC_Os05g27890Os.50475.1.S1_at11/115+16198490..16202163expressed protein
LOC_Os05g27900OsAffx.27048.1.S1_at11/115+16205034..16205498hypothetical protein
LOC_Os05g27910OsAffx.27049.1.S1_at11/115+16206606..16207526hypothetical protein
LOC_Os05g27920Os.10964.1.S1_at10/115+16211369..16218543phox domain-containing protein, putative, expressed
LOC_Os05g27930Os.7718.1.S1_at11/115+16218769..16222240AP2 domain containing protein, expressed
LOC_Os05g27940Os.12203.1.S1_at11/115+16224545..1622799040S ribosomal protein S7, putative, expressed
LOC_Os05g27950Os.7586.1.S1_at11/115+16228363..16232319cp protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27049.1.S1_at--1151--3291Chr05:16207344..16207368 (25 bp)
CACAAGCCGTCAAGTTTATCACAAA
LOC_Os05g27910
OsAffx.27049.1.S1_at--999--671Chr05:16206997..16207021 (25 bp)
ATGACCACCCAATGACTGAAGATAC
LOC_Os05g27910
OsAffx.27049.1.S1_at--169--1151Chr05:16206947..16206971 (25 bp)
AGTCCTAGTGATGTTGATCCTTCTT
LOC_Os05g27910
OsAffx.27049.1.S1_at--140--6371Chr05:16206932..16206956 (25 bp)
GATCCTTCTTTACATTATGACTCGG
LOC_Os05g27910
OsAffx.27049.1.S1_at--747--1991Chr05:16206913..16206937 (25 bp)
ACTCGGACTACCTTCCTGAGGAGAA
LOC_Os05g27910
OsAffx.27049.1.S1_at--1093--6951Chr05:16206877..16206901 (25 bp)
GTAGCTCATCTTCAAAGCGTCCAAA
LOC_Os05g27910
OsAffx.27049.1.S1_at--377--4751Chr05:16206818..16206842 (25 bp)
GCTGATGATAATCCAATTCTTCACA
LOC_Os05g27910
OsAffx.27049.1.S1_at--446--3151Chr05:16206804..16206828 (25 bp)
AATTCTTCACATAACCGGTGCTATG
LOC_Os05g27910
OsAffx.27049.1.S1_at--291--5231Chr05:16206698..16206722 (25 bp)
GAATACCCTACTATAGTTCGACTTC
LOC_Os05g27910
OsAffx.27049.1.S1_at--472--6712Chr05:16206683..16206707 (25 bp)
GTTCGACTTCATTTGCAGACATATC
LOC_Os05g27910
OsAffx.27049.1.S1_at--216--5052Chr07:18774929..18774997 (24 bp)
GCAGACATATCTTGCCACTCATGAA
NONE
Target Sequence 
CACAAGCCGTCAAGTTTATCACAAATTCCACAAGTTGAAGGCTCAATGGAAGGTGATAATGGAAGCGAAGAATTTAAGTG
GGGCCAACTTTGATGATGTTGAAAAAAGATTCCTATATGATGAGACGGAAGTTGTCCAAATGAATAATTTTATTAATCTA
CAAGCACCATATGACCACCCAATGACTGAAGATACTGATTTTATTGGTGAGAAAAATGGCAGTCCTAGTGATGTTGATCC
TTCTTTACATTATGACTCGGACTACCTTCCTGAGGAGAATAATAATAGAAGTAGCTCATCTTCAAAGCGTCCAAAAGGGA
GCAAGATTGATAAAGGTAAAAGAGTTAAAGCTGATGATAATCCAATTCTTCACATAACCGGTGCTATGAATAATATGTCA
GACACCATGCACTTCACACATGTGACACATCCAAATGAGTCCCTATTCAAGATAATCGATGAAATGGTAGAATACCCTAC
TATAGTTCGACTTCATTTGCAGACATATCTTGCCACTCATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27049.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis