Browse Element(s) Details


Os.12203.1.S1_at

Description gb:AF529175.1
DB_XREF= gi:22671663
GEN=RPS7
TID=Os.12203.1
CNT=67
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12203 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) ribosomal protein S7 (RPS7) mRNA, complete cds.
PROD=ribosomal protein S7
FL= gb:AK104191.1 gb:AF529175.1 gb:AK061627.1 gb:AK103081.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2794011/1140S ribosomal protein S7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g27890Os.50475.1.S1_at11/115+16198490..16202163expressed protein
LOC_Os05g27900OsAffx.27048.1.S1_at11/115+16205034..16205498hypothetical protein
LOC_Os05g27910OsAffx.27049.1.S1_at11/115+16206606..16207526hypothetical protein
LOC_Os05g27920Os.10964.1.S1_at10/115+16211369..16218543phox domain-containing protein, putative, expressed
LOC_Os05g27930Os.7718.1.S1_at11/115+16218769..16222240AP2 domain containing protein, expressed
LOC_Os05g27940Os.12203.1.S1_at11/115+16224545..1622799040S ribosomal protein S7, putative, expressed
LOC_Os05g27950Os.7586.1.S1_at11/115+16228363..16232319cp protein, putative, expressed
LOC_Os05g27960Os.7077.1.S1_at11/115+16234655..16241260glycosyl hydrolase family 85 protein, putative, expressed
LOC_Os05g27960Os.27744.1.S1_at1/115+16234655..16241260glycosyl hydrolase family 85 protein, putative, expressed
LOC_Os05g27970OsAffx.27050.1.S1_x_at11/115+16242826..16243626hypothetical protein
LOC_Os05g27980OsAffx.4449.1.S1_at11/115+16249450..16250290LOB domain protein 12, putative, expressed
LOC_Os05g27980OsAffx.3523.1.S1_x_at1/115+16249450..16250290LOB domain protein 12, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005843cellular_componentcytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12203.1.S1_at--468--2911Chr05:16225823..16225846 (24 bp)
AAGGATGTGGTTCTGGTTGCAACTA
LOC_Os05g27940
Os.12203.1.S1_at--1145--1411Chr05:16225777..16225801 (25 bp)
AGAAAGGCTCAGCTGTTGTTCGCCC
LOC_Os05g27940
Os.12203.1.S1_at--500--5411Chr05:16225680..16225704 (25 bp)
GAAGCGTGTCAGATACCACTTGGAT
LOC_Os05g27940
Os.12203.1.S1_at--74--671Chr05:16225087..16225107 (21 bp)
ATGAAGATCTTCCTGGACCCAAAGG
LOC_Os05g27940
Os.12203.1.S1_at--359--6091Chr05:16225048..16225072 (25 bp)
GAGTACAAGCTCGACACTTTCAGCT
LOC_Os05g27940
Os.12203.1.S1_at--210--2191Chr05:16225035..16225059 (25 bp)
ACACTTTCAGCTCTGTCTACAGGAG
LOC_Os05g27940
Os.12203.1.S1_at--901--951Chr05:16224999..16225023 (25 bp)
AGGACGTCGTGTTCGACTACCCCAT
LOC_Os05g27940
Os.12203.1.S1_at--684--651Chr05:16224976..16225000 (25 bp)
ATGACCGAGACTGCGTAAACCATGT
LOC_Os05g27940
Os.12203.1.S1_at--370--1151Chr05:16224944..16224968 (25 bp)
AGTCGACGGCTATCTTTGGCCGCAA
LOC_Os05g27940
Os.12203.1.S1_at--182--4771Chr05:16224917..16224941 (25 bp)
GCTGCTACTCTTCCTAAAATAGACT
LOC_Os05g27940
Os.12203.1.S1_at--579--1211Chr05:16224866..16224890 (25 bp)
AGTTTTGACAGTCCTGTGATCTGCA
LOC_Os05g27940
Target Sequence 
AAGGATGTGGTTCTGGTTGCAACTAGAAGAATAGTGAGGCCCCCAAAGAAAGGCTCAGCTGTTGTTCGCCCTCGTACCCG
CACACTTACTGCTGTTCATGATGGCATCTTGGAGGATGTTGTGTATCCAGCAGAGATTGTTGGGAAGCGTGTCAGATACC
ACTTGGATGGTAGAAAAATCATGAAGATCTTCCTGGACCCAAAGGAGCGCAACAACACCGAGTACAAGCTCGACACTTTC
AGCTCTGTCTACAGGAGGCTCTGTGGGAAGGACGTCGTGTTCGACTACCCCATGACCGAGACTGCGTAAACCATGTCATA
GTTAGTCGACGGCTATCTTTGGCCGCAAATGCTGCTACTCTTCCTAAAATAGACTATAACTGTGGTTTCCTATATGCGAA
AAGTTTTGACAGTCCTGTGATCTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12203.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis