Browse Element(s) Details


OsAffx.4449.1.S1_at

Description tigr:9633.m02554
TID=OsAffx.4449.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to lob domain protein 12
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2798011/11LOB domain protein 12, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g27940Os.12203.1.S1_at11/115+16224545..1622799040S ribosomal protein S7, putative, expressed
LOC_Os05g27950Os.7586.1.S1_at11/115+16228363..16232319cp protein, putative, expressed
LOC_Os05g27960Os.7077.1.S1_at11/115+16234655..16241260glycosyl hydrolase family 85 protein, putative, expressed
LOC_Os05g27960Os.27744.1.S1_at1/115+16234655..16241260glycosyl hydrolase family 85 protein, putative, expressed
LOC_Os05g27970OsAffx.27050.1.S1_x_at11/115+16242826..16243626hypothetical protein
LOC_Os05g27980OsAffx.4449.1.S1_at11/115+16249450..16250290LOB domain protein 12, putative, expressed
LOC_Os05g27980OsAffx.3523.1.S1_x_at1/115+16249450..16250290LOB domain protein 12, putative, expressed
LOC_Os05g27990Os.26886.2.S1_s_at5/115+16257525..16261239transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27990Os.26886.6.S1_s_at4/115+16257525..16261239transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27990OsAffx.16467.1.S1_at3/115+16257525..16261239transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27990Os.26886.3.S1_x_at3/115+16257525..16261239transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g28000OsAffx.14857.1.S1_at11/115+16263603..16264230hypothetical protein
LOC_Os05g28010Os.56148.1.S1_at8/115+16265851..16268412TAFII55 protein conserved region containing protein, expressed
LOC_Os05g28020NANA5+16273700..16273903hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009965biological_processleaf morphogenesis
GO:0010016biological_processshoot morphogenesis
GO:0010199biological_processorgan boundary specification
GO:0003677molecular_functionDNA binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4449.1.S1_at--873--8331Chr05:16250096..16250120 (25 bp)
GGCGGCGGTGCACCAAGGACTGCAT
LOC_Os05g27980
OsAffx.4449.1.S1_at--334--9111Chr05:16249880..16250012 (25 bp)
TGCTCCAGGAGCTGCCGGCGCAGCA
LOC_Os05g27980
OsAffx.4449.1.S1_at--325--4591Chr05:16249863..16249887 (25 bp)
GCGCAGCAGCGAGGCGACGCGGTAA
LOC_Os05g27980
OsAffx.4449.1.S1_at--615--891Chr05:16249721..16249745 (25 bp)
AGGCCGAGATCCTCTGTATCCAGAT
LOC_Os05g27980
OsAffx.4449.1.S1_at--683--4231Chr05:16249718..16249742 (25 bp)
CCGAGATCCTCTGTATCCAGATGCA
LOC_Os05g27980
OsAffx.4449.1.S1_at--381--3411Chr05:16249623..16249647 (25 bp)
CAGCAACAGCAGATGGTCGTGGACG
LOC_Os05g27980
OsAffx.4449.1.S1_at--122--2491Chr05:16249619..16249643 (25 bp)
AACAGCAGATGGTCGTGGACGCCGC
LOC_Os05g27980
OsAffx.4449.1.S1_at--17--9231Chr05:16249581..16249605 (25 bp)
TCCTTCCTCGTGCAGAACGGCGGCG
LOC_Os05g27980
OsAffx.4449.1.S1_at--86--4151Chr05:16249543..16249567 (25 bp)
CGCGGCGCAGCTGATAAGCGGCTAC
LOC_Os05g27980
OsAffx.4449.1.S1_at--282--4591Chr05:16249539..16249563 (25 bp)
GCGCAGCTGATAAGCGGCTACGGCT
LOC_Os05g27980
OsAffx.4449.1.S1_at--385--871Chr05:16249487..16249511 (25 bp)
ATGGCGTGGTGCACTACGCGGCGGC
LOC_Os05g27980
Target Sequence 
GGCGGCGGTGCACCAAGGACTGCATCTTCGCGCCCTTCTTCCCCGCCGACGACCCCCACAAGTTCGCCATCGTCCACAAG
GTCTTCGGCGCCAGCAATGTCAGCAAGATGCTCCAGGAGCTGCCGGCGCAGCAGCGAGGCGACGCGGTAAGCAGCCTGGT
GTACGAGGCGAACGCCCGGATGCGGGACCCCGTCTACGGCTGCGTCGGGGCCATCTCCTTCCTCCAGAACCAGGTGTCGC
AGCTGCAGATGCAGCTCGCCGTCGCGCAGGCCGAGATCCTCTGTATCCAGATGCAGCACCGCGACGACGGCGCCGCCCAC
CAGCTGGACGCCGCCGCCGACCACCACCCGCTGCTGGATCAGCAGCAGCAACAGCAGATGGTCGTGGACGCCGCCGACGC
GGCCGCCTCCTTCCTCGTGCAGAACGGCGGCGGAGGCGGAGGCCCCGCGGCGCAGCTGATAAGCGGCTACGGCTCGCCGG
CGGCCGGCGGCGGCGGTGGCCATGGCGTGGTGCACTACGCGGCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4449.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis