Browse Element(s) Details


Os.56148.1.S1_at

Description gb:AK109444.1
DB_XREF= gi:32994653
TID=Os.56148.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.56148 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-101-F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-101-F01, full insert sequence.
FL= gb:AK109444.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g280108/11TAFII55 protein conserved region containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g27960Os.7077.1.S1_at11/115+16234655..16241260glycosyl hydrolase family 85 protein, putative, expressed
LOC_Os05g27960Os.27744.1.S1_at1/115+16234655..16241260glycosyl hydrolase family 85 protein, putative, expressed
LOC_Os05g27970OsAffx.27050.1.S1_x_at11/115+16242826..16243626hypothetical protein
LOC_Os05g27980OsAffx.4449.1.S1_at11/115+16249450..16250290LOB domain protein 12, putative, expressed
LOC_Os05g27980OsAffx.3523.1.S1_x_at1/115+16249450..16250290LOB domain protein 12, putative, expressed
LOC_Os05g27990Os.26886.2.S1_s_at5/115+16257525..16261239transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27990Os.26886.6.S1_s_at4/115+16257525..16261239transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27990OsAffx.16467.1.S1_at3/115+16257525..16261239transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27990Os.26886.3.S1_x_at3/115+16257525..16261239transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g28000OsAffx.14857.1.S1_at11/115+16263603..16264230hypothetical protein
LOC_Os05g28010Os.56148.1.S1_at8/115+16265851..16268412TAFII55 protein conserved region containing protein, expressed
LOC_Os05g28020NANA5+16273700..16273903hypothetical protein
LOC_Os05g28040Os.54655.1.S1_at11/115+16284626..16285861expressed protein
LOC_Os05g28040OsAffx.27237.1.S1_x_at1/115+16284626..16285861expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56148.1.S1_at--305--8371Chr05:16266978..16267002 (25 bp)
GGCGTTTCCGCAGGGAGCCTGATTT
LOC_Os05g28010
Os.56148.1.S1_at--219--8091Chr05:16266870..16266989 (25 bp)
GGAGCCTGATTTGAATGCCGAACTT
LOC_Os05g28010
Os.56148.1.S1_at--1006--9171Chr05:16266855..16266878 (24 bp)
TGCCGAACTTGTTCACCGAGTTGAG
LOC_Os05g28010
Os.56148.1.S1_at--502--7691NONE
GGGTATCTATCAACCAGAATGCCAG
NONE
Os.56148.1.S1_at--755--2751Chr05:16266165..16266189 (25 bp)
AAGAAAGCGGGACCAGCTCCAGCAA
LOC_Os05g28010
Os.56148.1.S1_at--50--2471Chr05:16266125..16266149 (25 bp)
AACAACCTGCTGCAAATGGCGAAGA
LOC_Os05g28010
Os.56148.1.S1_at--879--3851Chr05:16266077..16266101 (25 bp)
CTGATGAGTCCGTTGACCCGTAGAA
LOC_Os05g28010
Os.56148.1.S1_at--539--5811Chr05:16266063..16266087 (25 bp)
GACCCGTAGAATTCAAGTGGACAGG
LOC_Os05g28010
Os.56148.1.S1_at--858--9891Chr05:16265967..16265991 (25 bp)
TACTATGTACGGACTTGCTGTCACT
LOC_Os05g28010
Os.56148.1.S1_at--509--2251NONE
AAATTTGATGCGACGCTGGGACCCT
NONE
Os.56148.1.S1_at--895--331NONE
ATACACTGGTGCTTTACTGAGAATC
NONE
Target Sequence 
GGCGTTTCCGCAGGGAGCCTGATTTGAATGCCGAACTTGTTCACCGAGTTGAGAAGGATCTCATTAGTATTATGCATGGG
GTATCTATCAACCAGAATGCCAGTGCAATTCTAAGGGCAGGAGAAGGTGGCGATCGTAAGAAAGCGGGACCAGCTCCAGC
AACCAAANCTAATGTCAAACAACCTGCTGCAAATGGCGAAGAAGCTGAGGCAGAGAGGAGTGACTCTGATGAGTCCGTTG
ACCCGTAGAATTCAAGTGGACAGGAATGATAAATAATCCTGCTCCTATGCCCGAGCACACCCAGTTGACTTAGNAGTTCA
TATCACAGGGNAANGNTACTATGTACGGACTTGCTGTCACTGNTACGGCATGNTAATATTTGNGNTATGTAAAATTTGAT
GCGACGCTGGGACCCTTGGGGATGANGAGATATGGCTGCTNCTGGATGAAAATACACTGGTGCTTTACTGAGAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56148.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis