Browse Element(s) Details


Os.54655.1.S1_at

Description gb:AK106384.1
DB_XREF= gi:32991593
TID=Os.54655.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54655 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-102-E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-102-E04, full insert sequence.
FL= gb:AK106384.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2804011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g27990Os.26886.2.S1_s_at5/115+16257525..16261239transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27990Os.26886.6.S1_s_at4/115+16257525..16261239transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27990OsAffx.16467.1.S1_at3/115+16257525..16261239transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27990Os.26886.3.S1_x_at3/115+16257525..16261239transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g28000OsAffx.14857.1.S1_at11/115+16263603..16264230hypothetical protein
LOC_Os05g28010Os.56148.1.S1_at8/115+16265851..16268412TAFII55 protein conserved region containing protein, expressed
LOC_Os05g28020NANA5+16273700..16273903hypothetical protein
LOC_Os05g28040Os.54655.1.S1_at11/115+16284626..16285861expressed protein
LOC_Os05g28040OsAffx.27237.1.S1_x_at1/115+16284626..16285861expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54655.1.S1_at--417--2931Chr05:16285174..16285198 (25 bp)
AAGGCGCGTGGGATCCCCTACGAGA
LOC_Os05g28040
Os.54655.1.S1_at--661--3991Chr05:16285168..16285192 (25 bp)
CGTGGGATCCCCTACGAGAAGAAGC
LOC_Os05g28040
Os.54655.1.S1_at--385--9911Chr05:16284965..16284989 (25 bp)
TACTCCTCCGGCAACAAGTGTCGGT
LOC_Os05g28040
Os.54655.1.S1_at--189--2871Chr05:16284950..16284974 (25 bp)
AAGTGTCGGTACTACCACCGCGGCG
LOC_Os05g28040
Os.54655.1.S1_at--614--2311Chr05:16284892..16284916 (25 bp)
AAAGGATCGGCGACGAGTTCGTGAT
LOC_Os05g28040
Os.54655.1.S1_at--1052--5771Chr05:16284881..16284905 (25 bp)
GACGAGTTCGTGATAAGTGTAGAGA
LOC_Os05g28040
Os.54655.1.S1_at--700--6951Chr05:16284863..16284887 (25 bp)
GTAGAGAAATCATTTGCCTCCCTTT
LOC_Os05g28040
Os.54655.1.S1_at--490--5591Chr05:16284858..16284882 (25 bp)
GAAATCATTTGCCTCCCTTTCAATC
LOC_Os05g28040
Os.54655.1.S1_at--1061--9191Chr05:16284821..16284845 (25 bp)
TCCAAATTCTAATCCCCTGCAGCAT
LOC_Os05g28040
Os.54655.1.S1_at--192--7971Chr05:16284682..16284706 (25 bp)
GGATCGAGTACATAAAAGGCTGCTA
LOC_Os05g28040
Os.54655.1.S1_at--1112--291Chr05:16284671..16284695 (25 bp)
ATAAAAGGCTGCTAAATTAACATGC
LOC_Os05g28040
Target Sequence 
AAGGCGCGTGGGATCCCCTACGAGAAGAAGCGCAAGCGTGGCGCCGCCGCCGCCGCCGCCGCCCCTCCCGTCGTCGTCGC
GCCGCCCCCCGTCGTCACCGCGCCCGACGACGCCACCGGGACGTCGGGAGGCGCCGGCGAGGACGACGACGACGACGAGG
CCACCCACTCCGGCGAGCAGCAGGACACCACGCCGGCGGCCTCTCCTACTACTCCTCCGGCAACAAGTGTCGGTACTACC
ACCGCGGCGGCGACTGCGGCGGCGGCGAAGGGAAGTGCGGCGAAAGGATCGGCGACGAGTTCGTGATAAGTGTAGAGAAA
TCATTTGCCTCCCTTTCAATCCCCTCATCACCCTCCAAATTCTAATCCCCTGCAGCATCATCATCATCATCTTAATTTTT
AGTGGTTGATTAATTATTATGATTATTACTGTTATTATTTGTTGGTATGAGAGTGGAGAGGCCTAATTAAGGGGGTTTGT
AGGATAATGTTAGGATCGAGTACATAAAAGGCTGCTAAATTAACATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54655.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis