Browse Element(s) Details


OsAffx.27048.1.S1_at

Description tigr:9633.m02545
TID=OsAffx.27048.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2790011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g27870Os.7084.1.S1_at11/115+16174911..16186966expressed protein
LOC_Os05g27880Os.6000.3.S1_x_at11/115+16189305..16195798BTB/POZ domain containing protein, expressed
LOC_Os05g27880Os.6000.2.S1_at11/115+16189305..16195798BTB/POZ domain containing protein, expressed
LOC_Os05g27880Os.6000.1.S1_at11/115+16189305..16195798BTB/POZ domain containing protein, expressed
LOC_Os05g27890Os.50475.1.S1_at11/115+16198490..16202163expressed protein
LOC_Os05g27900OsAffx.27048.1.S1_at11/115+16205034..16205498hypothetical protein
LOC_Os05g27910OsAffx.27049.1.S1_at11/115+16206606..16207526hypothetical protein
LOC_Os05g27920Os.10964.1.S1_at10/115+16211369..16218543phox domain-containing protein, putative, expressed
LOC_Os05g27930Os.7718.1.S1_at11/115+16218769..16222240AP2 domain containing protein, expressed
LOC_Os05g27940Os.12203.1.S1_at11/115+16224545..1622799040S ribosomal protein S7, putative, expressed
LOC_Os05g27950Os.7586.1.S1_at11/115+16228363..16232319cp protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27048.1.S1_at--755--8311Chr05:16205117..16205141 (25 bp)
GGCTCGGTGGCTTTGCAGGCACACA
LOC_Os05g27900
OsAffx.27048.1.S1_at--321--5011Chr05:16205131..16205155 (25 bp)
GCAGGCACACAGGTGGTGCAAAGCT
LOC_Os05g27900
OsAffx.27048.1.S1_at--1027--7491Chr05:16205143..16205167 (25 bp)
GTGGTGCAAAGCTGGTTCTCATCGA
LOC_Os05g27900
OsAffx.27048.1.S1_at--277--9031Chr05:16205147..16205171 (25 bp)
TGCAAAGCTGGTTCTCATCGAAGGG
LOC_Os05g27900
OsAffx.27048.1.S1_at--434--6171Chr05:16205214..16205238 (25 bp)
GAGGATGATCAAGCGGTTCTCTCCA
LOC_Os05g27900
OsAffx.27048.1.S1_at--386--6291Chr05:16205217..16205241 (25 bp)
GATGATCAAGCGGTTCTCTCCAGGG
LOC_Os05g27900
OsAffx.27048.1.S1_at--839--2751Chr05:16205256..16205379 (25 bp)
AAGACACAGATCTGCTTGCGCATCT
LOC_Os05g27900
OsAffx.27048.1.S1_at--485--6411Chr05:16205264..16205387 (25 bp)
GATCTGCTTGCGCATCTGGACGAGC
LOC_Os05g27900
OsAffx.27048.1.S1_at--943--471Chr05:16205376..16205400 (25 bp)
ATCTGGACGAGCGATGCTGCACATG
LOC_Os05g27900
OsAffx.27048.1.S1_at--315--5891Chr05:16205384..16205408 (25 bp)
GAGCGATGCTGCACATGGAATATTC
LOC_Os05g27900
OsAffx.27048.1.S1_at--29--851Chr05:16205398..16205422 (25 bp)
ATGGAATATTCGGTGTGAACATGAT
LOC_Os05g27900
Target Sequence 
GGCTCGGTGGCTTTGCAGGCACACAGGTGGTGCAAAGCTGGTTCTCATCGAAGGGGAGGGGGAGGGTGTGAGGACGGGAG
GTGTGGAGCTCCGGGAGGAGGATGATCAAGCGGTTCTCTCCAGGGGCGGCGGAGGCAGCAAGACACAGATCTGCTTGCGC
ATCTGGACGAGCGATGCTGCACATGGAATATTCGGTGTGAACATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27048.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis