Browse Element(s) Details


Os.6000.2.S1_at

Description gb:AK066614.1
DB_XREF= gi:32976632
TID=Os.6000.2
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6000 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033067H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013074N01, full insert sequence.
FL= gb:AK066614.1 gb:AK068823.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2788011/11BTB/POZ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g27860Os.47463.1.S1_x_at5/115+16164514..16167734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27860Os.14491.2.S1_x_at4/115+16164514..16167734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27870Os.7084.1.S1_at11/115+16174911..16186966expressed protein
LOC_Os05g27880Os.6000.3.S1_x_at11/115+16189305..16195798BTB/POZ domain containing protein, expressed
LOC_Os05g27880Os.6000.2.S1_at11/115+16189305..16195798BTB/POZ domain containing protein, expressed
LOC_Os05g27880Os.6000.1.S1_at11/115+16189305..16195798BTB/POZ domain containing protein, expressed
LOC_Os05g27890Os.50475.1.S1_at11/115+16198490..16202163expressed protein
LOC_Os05g27900OsAffx.27048.1.S1_at11/115+16205034..16205498hypothetical protein
LOC_Os05g27910OsAffx.27049.1.S1_at11/115+16206606..16207526hypothetical protein
LOC_Os05g27920Os.10964.1.S1_at10/115+16211369..16218543phox domain-containing protein, putative, expressed
LOC_Os05g27930Os.7718.1.S1_at11/115+16218769..16222240AP2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6000.2.S1_at--633--3971Chr05:16189939..16189963 (25 bp)
CGGTGAGGCAGGATGGCTCCGCGAC
LOC_Os05g27880
Os.6000.2.S1_at--1026--851Chr05:16189927..16189951 (25 bp)
ATGGCTCCGCGACCTTCATGAGGTC
LOC_Os05g27880
Os.6000.2.S1_at--672--8311Chr05:16189925..16189949 (25 bp)
GGCTCCGCGACCTTCATGAGGTCGT
LOC_Os05g27880
Os.6000.2.S1_at--1147--9291Chr05:16189922..16189946 (25 bp)
TCCGCGACCTTCATGAGGTCGTGGG
LOC_Os05g27880
Os.6000.2.S1_at--458--4111Chr05:16189920..16189944 (25 bp)
CGCGACCTTCATGAGGTCGTGGGTT
LOC_Os05g27880
Os.6000.2.S1_at--813--3191Chr05:16189789..16189813 (25 bp)
CAATGGACGGCCGTAGCTGGACTAG
LOC_Os05g27880
Os.6000.2.S1_at--276--8451Chr05:16189725..16189749 (25 bp)
TGGCCAGTTCGCGTCGTGGCCGATC
LOC_Os05g27880
Os.6000.2.S1_at--685--8431Chr05:16189724..16189748 (25 bp)
GGCCAGTTCGCGTCGTGGCCGATCA
LOC_Os05g27880
Os.6000.2.S1_at--56--151Chr05:16189336..16189360 (25 bp)
ATTACACGAGGAATGCTTGGACGAA
LOC_Os05g27880
Os.6000.2.S1_at--424--10471Chr05:16189335..16189359 (25 bp)
TTACACGAGGAATGCTTGGACGAAG
LOC_Os05g27880
Os.6000.2.S1_at--39--9851Chr05:16189334..16189358 (25 bp)
TACACGAGGAATGCTTGGACGAAGG
LOC_Os05g27880
Target Sequence 
CGGTGAGGCAGGATGGCTCCGCGACCTTCATGAGGTCGTGGGTTNNCTTNNCANNNNGGGATCAATGGACGGCCGTAGCT
GGACTAGCCTGCATGTCCACGAAGACGACCAGACCATNTGCCAGCCTGGCCAGTTCGCGTCGTGGCCGATCACCGGCCAG
ACGGCGTTGCTGCCGTTTCGGTTCTTCCGGGTCATGCTGACGGCCCCGGCGACCGGNGTCTCCAACACCTGGAATCTNTG
CATCTGCTTCCTCGAGCTNTATGGCTACTTCCGGTGATTGGGACAGCTTTGCTGCACACCCCTGAGAAGAGATCGGCAGT
GAGCAATGATCTAGCTAGGTGGCTCTGTAATCCGGTGTGTTCATATNTGCACTAGTAAAGAACTTTTCGTTTTAGTTTGC
TTTGGTCACTTTGGTTTTTTTTTTTTCTTTGCGGTATAATTACCATAGAAAAAGTGAATAATGCTTATACGTCCTTGTAA
TACACATGTGTCATCTGTAAGTTGGTACAAAACNCGTGATTACACGAGGAATGCTTGGACGAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6000.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis