Browse Element(s) Details


Os.49126.1.S1_at

Description gb:AK102690.1
DB_XREF= gi:32987899
TID=Os.49126.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49126 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033103B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033103B09, full insert sequence.
FL= gb:AK102690.1 gb:AK069411.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0548010/11Transcription factor HBP-1b, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05420OsAffx.7002.1.S1_at11/1111+2433667..2435897hypothetical protein
LOC_Os11g05430OsAffx.18688.1.S1_at8/1111+2438566..2439788hypothetical protein
LOC_Os11g05440OsAffx.7003.1.S1_at11/1111+2441129..2441608expressed protein
LOC_Os11g05450OsAffx.18689.1.S1_at11/1111+2444095..2444523hypothetical protein
LOC_Os11g05460NANA11+2445811..2447095hypothetical protein
LOC_Os11g05470Os.49726.1.S1_at11/1111+2448429..2450007CEN-like protein 2, putative, expressed
LOC_Os11g05480Os.49126.1.S1_at10/1111+2458323..2464637Transcription factor HBP-1b, putative, expressed
LOC_Os11g05490Os.16214.1.S1_at11/1111+2472570..2473367expressed protein
LOC_Os11g05500OsAffx.30828.1.S1_at11/1111+2479882..2480121hypothetical protein
LOC_Os11g05510NANA11+2484109..2484526tuber storage protein, putative
LOC_Os11g05520Os.54903.1.S1_at2/1111+2485289..2485837Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os11g05530Os.51005.1.S1_at11/1111+2486586..2487649expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009627biological_processsystemic acquired resistance
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49126.1.S1_at--438--7951Chr11:2460265..2460289 (25 bp)
GGATCAGCTGCATCAGTCATTAGCA
LOC_Os11g05480
Os.49126.1.S1_at--198--7131Chr11:2460250..2460274 (25 bp)
GTCATTAGCAGAAACCGTGGCTGGA
LOC_Os11g05480
Os.49126.1.S1_at--85--10831Chr11:2460216..2460240 (25 bp)
TTGGATGACCCCAACGTCGGGAGTT
LOC_Os11g05480
Os.49126.1.S1_at--931--1891Chr11:2460203..2460227 (25 bp)
ACGTCGGGAGTTTCATGGGTCACAT
LOC_Os11g05480
Os.49126.1.S1_at--458--8631Chr11:2460188..2460212 (25 bp)
TGGGTCACATGGCTATTGCCCTCGG
LOC_Os11g05480
Os.49126.1.S1_at--914--10691Chr11:2460173..2460197 (25 bp)
TTGCCCTCGGCCAGCTATCAAATCT
LOC_Os11g05480
Os.49126.1.S1_at--170--6211Chr11:2459325..2459349 (25 bp)
GAGGCAGCAGACTATCCATCAGATG
LOC_Os11g05480
Os.49126.1.S1_at--494--10591NONE
TTCTCGCCCTCGAGAGATACTGGTG
NONE
Os.49126.1.S1_at--1020--1491Chr11:2458572..2458596 (25 bp)
AGCACATCCATCTGAGAGCCAATAT
LOC_Os11g05480
Os.49126.1.S1_at--33--6011Chr11:2458559..2458583 (25 bp)
GAGAGCCAATATTCAGCCTTCTGAA
LOC_Os11g05480
Os.49126.1.S1_at--1023--10512Chr11:26270885..26270930 (25 bp)
TTCAGCCTTCTGAAATCCTGTTTCA
NONE
Target Sequence 
GGATCAGCTGCATCAGTCATTAGCAGAAACCGTGGCTGGAGGGTCCCCGTTGGATGACCCCAACGTCGGGAGTTTCATGG
GTCACATGGCTATTGCCCTCGGCCAGCTATCAAATCTTGAAGGTTTTGTCATACAGGCTGATAATTTGAGGCAGCAGACT
ATCCATCAGATGCACAGGATTCTGACAGTCAGGCAGGCAGCTCGATGTTTCTTGGCCATTGGAGAGTACCATAATCGCCT
CCGTGCCCTGAGCTCACTTTGGGCTTCTCGCCCTCGAGAGATACTGGTGGCAGATGAAGGCAATTGTGGAGAGCTAAGCA
TTGCAGCACATCCATCTGAGAGCCAATATTCAGCCTTCTGAAATCCTGTTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49126.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis