Browse Element(s) Details


Os.49127.1.S1_at

Description gb:AK060628.1
DB_XREF= gi:32970646
TID=Os.49127.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49127 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013170B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-026-H04, full insert sequence.
FL= gb:AK068942.1 gb:AK060628.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2885011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28830OsAffx.30067.1.S1_at11/119+17505381..17509105Serine carboxypeptidase family protein
LOC_Os09g28840OsAffx.30068.1.S1_at11/119+17512624..17517474Serine carboxypeptidase family protein, expressed
LOC_Os09g28850Os.49127.1.S1_at11/119+17533413..17536817expressed protein
LOC_Os09g28860OsAffx.17955.1.S1_at11/119+17541290..17542005Late embryogenesis abundant protein D-34, putative
LOC_Os09g28869NANA9+17543887..17544416NA
LOC_Os09g28880Os.50419.1.S2_at11/119+17549265..17552888uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os09g28880Os.50419.1.S1_x_at11/119+17549265..17552888uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os09g28890Os.49181.1.S1_at11/119+17555973..17557590transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49127.1.S1_at--655--8991Chr09:17535986..17536139 (25 bp)
TGAAGCATGTGAATCCTGGTGGAGT
LOC_Os09g28850
Os.49127.1.S1_at--727--7251Chr09:17536236..17536379 (25 bp)
GTCCTCCCCTGCTGTGAGGGTGTAC
LOC_Os09g28850
Os.49127.1.S1_at--286--4111Chr09:17536459..17536483 (25 bp)
CGAAGGTGGCGATCCCGAAGCTGCT
LOC_Os09g28850
Os.49127.1.S1_at--965--1031Chr09:17536630..17536654 (25 bp)
AGGTCCTGCCGTACGAATTCAGATT
LOC_Os09g28850
Os.49127.1.S1_at--626--4111Chr09:17536643..17536667 (25 bp)
CGAATTCAGATTCAGGTACCTGCTG
LOC_Os09g28850
Os.49127.1.S1_at--804--6971Chr09:17536658..17536682 (25 bp)
GTACCTGCTGGCCTCATGAAGAGAG
LOC_Os09g28850
Os.49127.1.S1_at--72--6031Chr09:17536678..17536702 (25 bp)
GAGAGGCCAGTGAGTAGCAGCAATC
LOC_Os09g28850
Os.49127.1.S1_at--1014--6951Chr09:17536691..17536715 (25 bp)
GTAGCAGCAATCAGCGAGTGAATTC
LOC_Os09g28850
Os.49127.1.S1_at--325--7151Chr09:17536708..17536732 (25 bp)
GTGAATTCGAGGGTGTTTTACTGCA
LOC_Os09g28850
Os.49127.1.S1_at--714--10331Chr09:17536724..17536748 (25 bp)
TTTACTGCACCTTGTACACAGGCTT
LOC_Os09g28850
Os.49127.1.S1_at--577--3171Chr09:17536754..17536778 (25 bp)
AATTGTGAGTTTTGTTCTTCGGTGA
LOC_Os09g28850
Target Sequence 
TGAAGCATGTGAATCCTGGTGGAGTGACCAAGGGCGCCGCCGACGACGTGACGATGCGAGGCGTGTTCGGGCTGGAGTGG
CCTGAGCCCCTGGTCACCTTCGCGCTCTCCTGCGGCAGCTGGTCCTCCCCTGCTGTGAGGGTGTACACGGCGCGGGGAGT
GGAGGAGGANCTGGAGGCGGCGAAGAGGGACTACCTGCAGNCGGCGNTGGTGGTGTCGGNGCCGGCGAAGGTGGCGATCC
CGAAGCTGCTGCACTGGTACCTCCTCGACTTCGCCAAGGACGTGGACTCCCTCATGGACTGGGTGTGCCTCCAGCTNCCG
AGCGAGCTGCGGCAGAAGGCGATGAGGATCGTGGAGGACGGCAGAAGGGGTGTCGCCGCCGAGTCGCGCCGCNTGCAGGT
CCTGCCGTACGAATTCAGATTCAGGTACCTGCTGGCCTCATGAAGAGAGGCCAGTGAGTAGCAGCAATCAGCGAGTGAAT
TCGAGGGTGTTTTACTGCACCTTGTACACAGGCTTCCAATAATTGTGAGTTTTGTTCTTCGGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49127.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis