Browse Element(s) Details


OsAffx.30067.1.S1_at

Description tigr:9637.m02539
TID=OsAffx.30067.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Serine carboxypeptidase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2883011/11Serine carboxypeptidase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28780OsAffx.17952.1.S1_x_at11/119+17480452..17480742hypothetical protein
LOC_Os09g28780OsAffx.17952.1.S1_at11/119+17480452..17480742hypothetical protein
LOC_Os09g28790NANA9+17488301..17489681retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g28800OsAffx.17953.1.S1_x_at11/119+17494021..17494374hypothetical protein
LOC_Os09g28800OsAffx.17953.1.S1_at11/119+17494021..17494374hypothetical protein
LOC_Os09g28810Os.6209.1.S1_at11/119+17498162..17502034RNA recognition motif family protein, expressed
LOC_Os09g28820OsAffx.17954.1.S1_at11/119+17502556..17503250hypothetical protein
LOC_Os09g28830OsAffx.30067.1.S1_at11/119+17505381..17509105Serine carboxypeptidase family protein
LOC_Os09g28840OsAffx.30068.1.S1_at11/119+17512624..17517474Serine carboxypeptidase family protein, expressed
LOC_Os09g28850Os.49127.1.S1_at11/119+17533413..17536817expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004185molecular_functionserine carboxypeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30067.1.S1_at--231--4991Chr09:17506721..17506745 (25 bp)
GCATGCTCTGATGCTATGGACGCAT
LOC_Os09g28830
OsAffx.30067.1.S1_at--148--10771Chr09:17506696..17506720 (25 bp)
TTGATTCTGGTAACACCGATCCCTA
LOC_Os09g28830
OsAffx.30067.1.S1_at--837--5831Chr09:17506679..17506703 (25 bp)
GATCCCTACGACATATACGGACCGG
LOC_Os09g28830
OsAffx.30067.1.S1_at--789--311Chr09:17506665..17506689 (25 bp)
ATACGGACCGGTTTGCATCAACGCA
LOC_Os09g28830
OsAffx.30067.1.S1_at--149--8311Chr09:17506508..17506532 (25 bp)
GGCTATGATCCATGCAGCAACTACT
LOC_Os09g28830
OsAffx.30067.1.S1_at--527--2651Chr09:17506463..17506487 (25 bp)
AATCCCGTGGTACAGAAGGCTCTCC
LOC_Os09g28830
OsAffx.30067.1.S1_at--112--2951Chr09:17506448..17506472 (25 bp)
AAGGCTCTCCATGCTAGAGTGACAA
LOC_Os09g28830
OsAffx.30067.1.S1_at--1074--3671Chr09:17505718..17505951 (25 bp)
CTATATTTCTAAGCGGCGACCTCGA
LOC_Os09g28830
OsAffx.30067.1.S1_at--967--2171Chr09:17505490..17505514 (25 bp)
ACACGGGTGGGCTAGTGTTCATCTC
LOC_Os09g28830
OsAffx.30067.1.S1_at--1015--7231Chr09:17505443..17505467 (25 bp)
GTCCCTTACTTCCAGCCTGAGAAAG
LOC_Os09g28830
OsAffx.30067.1.S1_at--275--5571Chr09:17505423..17505447 (25 bp)
GAAAGCACTCATCGTTGTCAGCTCC
LOC_Os09g28830
Target Sequence 
GCATGCTCTGATGCTATGGACGCATTTGATTCTGGTAACACCGATCCCTACGACATATACGGACCGGTTTGCATCAACGC
ACCCGACGGAAAATTCTTCCCCAGCCGCATTGTGCCAGGCTATGATCCATGCAGCAACTACTACATCCACGCTTACCTTA
ACAATCCCGTGGTACAGAAGGCTCTCCATGCTAGAGTGACAACGTGGTTAGGCTGCAAAAAGTCTTATAATATGAAACGG
AGGAAGTACATATCTGCCAAAATGCAAGCTTGTGGCAAATATTCAAATCGAACTGTAACTAGTACTATATTTCTAAGCGG
CGACCTCGACTCCGTGTGCCCGCTCACAGCCACGAGGTACTCCGTCGGTGACCTCGGCCTCGCCGTCACTGAACCATGGC
GCCCATGGACAGCAAACAGAGAGGTTGGAGGGTATGTTCAGCAATACACGGGTGGGCTAGTGTTCATCTCCGTAAGGGGA
GCTGGCCATCAGGTCCCTTACTTCCAGCCTGAGAAAGCACTCATCGTTGTCAGCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30067.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis