Browse Element(s) Details


OsAffx.17952.1.S1_x_at

Description tigr:9637.m02534
TID=OsAffx.17952.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2878011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28720Os.24753.1.S1_at11/119+17457984..174593732-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28730Os.49327.1.S1_x_at11/119+17459641..17461069esterase, putative, expressed
LOC_Os09g28740Os.12967.2.A2_at11/119+17466118..174684252-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28740Os.12967.2.A1_at11/119+17466118..174684252-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28750Os.11109.1.S1_at11/119+17470047..174712082-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28760OsAffx.30066.1.S1_at11/119+17472041..174725772-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28770OsAffx.17951.1.S1_at11/119+17475730..17478575Patatin-like phospholipase family protein, expressed
LOC_Os09g28780OsAffx.17952.1.S1_x_at11/119+17480452..17480742hypothetical protein
LOC_Os09g28780OsAffx.17952.1.S1_at11/119+17480452..17480742hypothetical protein
LOC_Os09g28790NANA9+17488301..17489681retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g28800OsAffx.17953.1.S1_x_at11/119+17494021..17494374hypothetical protein
LOC_Os09g28800OsAffx.17953.1.S1_at11/119+17494021..17494374hypothetical protein
LOC_Os09g28810Os.6209.1.S1_at11/119+17498162..17502034RNA recognition motif family protein, expressed
LOC_Os09g28820OsAffx.17954.1.S1_at11/119+17502556..17503250hypothetical protein
LOC_Os09g28830OsAffx.30067.1.S1_at11/119+17505381..17509105Serine carboxypeptidase family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17952.1.S1_x_at--1157--8591Chr09:17480483..17480507 (25 bp)
TGGTCGCATTGCTCTTCGTGTCGAG
LOC_Os09g28780
OsAffx.17952.1.S1_x_at--343--71Chr09:17480490..17480514 (25 bp)
ATTGCTCTTCGTGTCGAGCCACGTT
LOC_Os09g28780
OsAffx.17952.1.S1_x_at--507--9091Chr09:17480492..17480516 (25 bp)
TGCTCTTCGTGTCGAGCCACGTTGT
LOC_Os09g28780
OsAffx.17952.1.S1_x_at--66--9571Chr09:17480495..17480519 (25 bp)
TCTTCGTGTCGAGCCACGTTGTGCG
LOC_Os09g28780
OsAffx.17952.1.S1_x_at--764--9411Chr09:17480498..17480522 (25 bp)
TCGTGTCGAGCCACGTTGTGCGCCA
LOC_Os09g28780
OsAffx.17952.1.S1_x_at--901--7451Chr09:17480500..17480524 (25 bp)
GTGTCGAGCCACGTTGTGCGCCACG
LOC_Os09g28780
OsAffx.17952.1.S1_x_at--977--8711Chr09:17480501..17480525 (25 bp)
TGTCGAGCCACGTTGTGCGCCACGG
LOC_Os09g28780
OsAffx.17952.1.S1_x_at--612--991Chr09:17480582..17480606 (25 bp)
AGGAGGCGCCGCAGTACGCATCCGC
LOC_Os09g28780
OsAffx.17952.1.S1_x_at--993--1171Chr09:17480594..17480618 (25 bp)
AGTACGCATCCGCTCGAGGCGGCCA
LOC_Os09g28780
OsAffx.17952.1.S1_x_at--65--6991Chr09:17480595..17480619 (25 bp)
GTACGCATCCGCTCGAGGCGGCCAG
LOC_Os09g28780
OsAffx.17952.1.S1_x_at--989--9351Chr09:17480656..17480680 (25 bp)
TCGAAGATGGCGAGCACCGACGGCC
LOC_Os09g28780
Target Sequence 
TGGTCGCATTGCTCTTCGTGTCGAGCCACGTTGTGCGCCACGGCGAGGCGAGGCGGCTGACCGCGGGGGTGGCGGCGCCG
GCGAGCAAGGGCGGCGAGGAGGAGGCGCCGCAGTACGCATCCGCTCGAGGCGGCCAGCCGGCGGCTGCTGCCGGTGGCGG
CGTGACGGCGGCGTCGAAGATGGCGAGCACCGACGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17952.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis