Browse Element(s) Details


Os.6209.1.S1_at

Description gb:AK067260.1
DB_XREF= gi:32977278
TID=Os.6209.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.6209 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013096N13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013096N13, full insert sequence.
FL= gb:AK060597.1 gb:AK067260.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2881011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28770OsAffx.17951.1.S1_at11/119+17475730..17478575Patatin-like phospholipase family protein, expressed
LOC_Os09g28780OsAffx.17952.1.S1_x_at11/119+17480452..17480742hypothetical protein
LOC_Os09g28780OsAffx.17952.1.S1_at11/119+17480452..17480742hypothetical protein
LOC_Os09g28790NANA9+17488301..17489681retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g28800OsAffx.17953.1.S1_x_at11/119+17494021..17494374hypothetical protein
LOC_Os09g28800OsAffx.17953.1.S1_at11/119+17494021..17494374hypothetical protein
LOC_Os09g28810Os.6209.1.S1_at11/119+17498162..17502034RNA recognition motif family protein, expressed
LOC_Os09g28820OsAffx.17954.1.S1_at11/119+17502556..17503250hypothetical protein
LOC_Os09g28830OsAffx.30067.1.S1_at11/119+17505381..17509105Serine carboxypeptidase family protein
LOC_Os09g28840OsAffx.30068.1.S1_at11/119+17512624..17517474Serine carboxypeptidase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6209.1.S1_at--891--4691Chr09:17501263..17501287 (25 bp)
GCGGCTTTGTGCAGTTTGTTCAGAG
LOC_Os09g28810
Os.6209.1.S1_at--561--5531Chr09:17501435..17501459 (25 bp)
GAAACAGACCGTGCGTCTTTCGTGG
LOC_Os09g28810
Os.6209.1.S1_at--92--2471Chr09:17501613..17501637 (25 bp)
AACAACGGGATGTACTACGCAGCCT
LOC_Os09g28810
Os.6209.1.S1_at--988--1671Chr09:17501633..17501657 (25 bp)
AGCCTCGCCGTTTTACAGTGGATAC
LOC_Os09g28810
Os.6209.1.S1_at--415--7591Chr09:17501687..17501711 (25 bp)
GGGCATGTACGCTGCTGCTTATGGC
LOC_Os09g28810
Os.6209.1.S1_at--304--8691Chr09:17501760..17501784 (25 bp)
TGTGCTTCACCTCAAACTGGAGCTA
LOC_Os09g28810
Os.6209.1.S1_at--838--1391Chr09:17501836..17501860 (25 bp)
AGACGACGGTTTCCTAGGTCAGCTA
LOC_Os09g28810
Os.6209.1.S1_at--623--9851Chr09:17501893..17501917 (25 bp)
TACACGAACTAGCTAGCGCCACTAA
LOC_Os09g28810
Os.6209.1.S1_at--439--10231Chr09:17501925..17501949 (25 bp)
TATTGACTGGCCATGGTCTGCTGAA
LOC_Os09g28810
Os.6209.1.S1_at--1151--7151Chr09:17501940..17501964 (25 bp)
GTCTGCTGAACTCTTCTTCCAGAAA
LOC_Os09g28810
Os.6209.1.S1_at--68--2751Chr09:17501964..17501988 (25 bp)
AAGAAGTTTTGACCTGGAGCTGCAC
LOC_Os09g28810
Target Sequence 
GCGGCTTTGTGCAGTTTGTTCAGAGGAAGAATGCGGAAGATGCATTGCAAGGACTGAACGGAAGCACCATTGGGAAACAG
ACCGTGCGTCTTTCGTGGGGACGCAATCCAGCAAACAAGCAGTTGAGGAGTGACAATGGCAGTCAGTGGAACAACGGGAT
GTACTACGCAGCCTCGCCGTTTTACAGTGGATACGGCTACCCTGCACCGTTCCCTGCTGATCCGGGCATGTACGCTGCTG
CTTATGGCGCCTACCCGTTCTACGGAAACCAACAACAAGTGAGCTAAGAGGTCACTTGTGCTTCACCTCAAACTGGAGCT
AGGCACGCAAGCATTAGCAGTAGCTCTTGCTAGAAGAAAAAAAGAACAAGGTAGACGACGGTTTCCTAGGTCAGCTAGAT
GCAGTCACTGGTTATGTAAAGTACATTACTACACGAACTAGCTAGCGCCACTAAGCCGCCCTATTGACTGGCCATGGTCT
GCTGAACTCTTCTTCCAGAAAAGAAGTTTTGACCTGGAGCTGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6209.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis