Browse Element(s) Details


OsAffx.17951.1.S1_at

Description tigr:9637.m02533
TID=OsAffx.17951.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AY085946 similar to latex allergen from Hevea brasiliensis
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2877011/11Patatin-like phospholipase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28700OsAffx.6431.1.S1_at11/119+17449768..17450732hypothetical protein
LOC_Os09g28710OsAffx.6432.1.S1_at11/119+17452709..17454354expressed protein
LOC_Os09g28720Os.24753.1.S1_at11/119+17457984..174593732-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28730Os.49327.1.S1_x_at11/119+17459641..17461069esterase, putative, expressed
LOC_Os09g28740Os.12967.2.A2_at11/119+17466118..174684252-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28740Os.12967.2.A1_at11/119+17466118..174684252-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28750Os.11109.1.S1_at11/119+17470047..174712082-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28760OsAffx.30066.1.S1_at11/119+17472041..174725772-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28770OsAffx.17951.1.S1_at11/119+17475730..17478575Patatin-like phospholipase family protein, expressed
LOC_Os09g28780OsAffx.17952.1.S1_x_at11/119+17480452..17480742hypothetical protein
LOC_Os09g28780OsAffx.17952.1.S1_at11/119+17480452..17480742hypothetical protein
LOC_Os09g28790NANA9+17488301..17489681retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g28800OsAffx.17953.1.S1_x_at11/119+17494021..17494374hypothetical protein
LOC_Os09g28800OsAffx.17953.1.S1_at11/119+17494021..17494374hypothetical protein
LOC_Os09g28810Os.6209.1.S1_at11/119+17498162..17502034RNA recognition motif family protein, expressed
LOC_Os09g28820OsAffx.17954.1.S1_at11/119+17502556..17503250hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17951.1.S1_at--476--4471Chr09:17477332..17477356 (25 bp)
GCCTGCGCACTTCTTCAGGACTGAA
LOC_Os09g28770
OsAffx.17951.1.S1_at--28--6091Chr09:17477400..17477420 (21 bp)
GAGTAGCTGCCAATAATCCGGCTTT
LOC_Os09g28770
OsAffx.17951.1.S1_at--677--551Chr09:17477564..17477584 (21 bp)
ATCCGGCTTTAGTTGCCATTGGAGA
LOC_Os09g28770
OsAffx.17951.1.S1_at--1145--9211Chr09:17477612..17477636 (25 bp)
TCCAGATTTCTTCCCAGTAAAACCA
LOC_Os09g28770
OsAffx.17951.1.S1_at--1063--8411Chr09:17477646..17477670 (25 bp)
GGCCGTTTTTTGGTCATTTCACTTG
LOC_Os09g28770
OsAffx.17951.1.S1_at--731--10231Chr09:17477654..17477678 (25 bp)
TTTGGTCATTTCACTTGGCACGGGC
LOC_Os09g28770
OsAffx.17951.1.S1_at--800--10851Chr09:17477668..17477692 (25 bp)
TTGGCACGGGCTCCCCAAAAATTGA
LOC_Os09g28770
OsAffx.17951.1.S1_at--405--1231Chr09:17477729..17477753 (25 bp)
AGTTCTGGATTGGTTGCTTGTTGGT
LOC_Os09g28770
OsAffx.17951.1.S1_at--92--7911Chr09:17477740..17477764 (25 bp)
GGTTGCTTGTTGGTGGGTCCACTCC
LOC_Os09g28770
OsAffx.17951.1.S1_at--1156--4351Chr09:17477758..17477782 (25 bp)
CCACTCCCTTGGTAGATATTTTCAC
LOC_Os09g28770
OsAffx.17951.1.S1_at--386--7851Chr09:17477768..17477792 (25 bp)
GGTAGATATTTTCACACAAGCAAGT
LOC_Os09g28770
Target Sequence 
GCCTGCGCACTTCTTCAGGACTGAAGATTGTCATGGAAACATCAAGGAATTCAATCTTATTGATGGTGGAGTAGCTGCCA
ATAATCCGGCTTTAGTTGCCATTGGAGAAGTAAGCAAGCAGATATTCAAGAAAAATCCAGATTTCTTCCCAGTAAAACCA
ATGGACTACGGCCGTTTTTTGGTCATTTCACTTGGCACGGGCTCCCCAAAAATTGAAGGGAAATACAATGCACAAAAAGC
TAAATCATGGGGAGTTCTGGATTGGTTGCTTGTTGGTGGGTCCACTCCCTTGGTAGATATTTTCACACAAGCAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17951.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis