Browse Element(s) Details


Os.49327.1.S1_x_at

Description gb:AK062676.1
DB_XREF= gi:32972694
TID=Os.49327.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49327 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-105-G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-105-G12, full insert sequence.
FL= gb:AK062676.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2873011/11esterase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28670OsAffx.17950.1.S1_at8/119+17430825..17435611hypothetical protein
LOC_Os09g28670Os.28346.1.S1_x_at6/119+17430825..17435611hypothetical protein
LOC_Os09g28670Os.50043.1.A1_at1/119+17430825..17435611hypothetical protein
LOC_Os09g28680OsAffx.17950.1.S1_at11/119+17437482..17445054retrotransposon protein, putative, unclassified
LOC_Os09g28680Os.28346.1.S1_x_at7/119+17437482..17445054retrotransposon protein, putative, unclassified
LOC_Os09g28680Os.28346.3.S1_x_at6/119+17437482..17445054retrotransposon protein, putative, unclassified
LOC_Os09g28680Os.28346.5.S1_x_at1/119+17437482..17445054retrotransposon protein, putative, unclassified
LOC_Os09g28690Os.19954.1.S1_at11/119+17446934..174485892-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28700OsAffx.6431.1.S1_at11/119+17449768..17450732hypothetical protein
LOC_Os09g28710OsAffx.6432.1.S1_at11/119+17452709..17454354expressed protein
LOC_Os09g28720Os.24753.1.S1_at11/119+17457984..174593732-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28730Os.49327.1.S1_x_at11/119+17459641..17461069esterase, putative, expressed
LOC_Os09g28740Os.12967.2.A2_at11/119+17466118..174684252-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28740Os.12967.2.A1_at11/119+17466118..174684252-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28750Os.11109.1.S1_at11/119+17470047..174712082-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28760OsAffx.30066.1.S1_at11/119+17472041..174725772-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28770OsAffx.17951.1.S1_at11/119+17475730..17478575Patatin-like phospholipase family protein, expressed
LOC_Os09g28780OsAffx.17952.1.S1_x_at11/119+17480452..17480742hypothetical protein
LOC_Os09g28780OsAffx.17952.1.S1_at11/119+17480452..17480742hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49327.1.S1_x_at--219--8391Chr09:17460346..17460370 (25 bp)
GGCGACAAGGTCAGCGGCGTGGTGC
LOC_Os09g28730
Os.49327.1.S1_x_at--352--10651Chr09:17460250..17460274 (25 bp)
TTCCACGGCACGTGGGAGTTCGTCA
LOC_Os09g28730
Os.49327.1.S1_x_at--657--3991Chr09:17460240..17460264 (25 bp)
CGTGGGAGTTCGTCAGCGCCGGCAA
LOC_Os09g28730
Os.49327.1.S1_x_at--374--4691Chr09:17460127..17460151 (25 bp)
GCGGAGCACTGCTGGTTCGTGGAGA
LOC_Os09g28730
Os.49327.1.S1_x_at--162--8652Chr09:17460064..17460088 (25 bp)
TGGGACGGCGAGGTGGAGCTCCACG
LOC_Os09g28730
Os.49327.1.S1_x_at--849--4351Chr09:17460044..17460068 (25 bp)
CCACGAGACCGATGGCGAGGGCCAT
LOC_Os09g28730
Os.49327.1.S1_x_at--969--8472Chr09:17460032..17460056 (25 bp)
TGGCGAGGGCCATGTCTTCTTCTTG
LOC_Os09g28730
Os.49327.1.S1_x_at--594--7552Chr09:17460026..17460050 (25 bp)
GGGCCATGTCTTCTTCTTGCCCAAG
LOC_Os09g28730
Os.49327.1.S1_x_at--1027--10571Chr09:17459928..17459952 (25 bp)
TTCGGTTATCCCTCGTGTCGCCGGT
LOC_Os09g28730
Os.49327.1.S1_x_at--383--6793Chr04:29426931..29426950 (20 bp)
GTTATCCCTCGTGTCGCCGGTGAGC
NONE
Os.49327.1.S1_x_at--711--10192Chr09:17459791..17459815 (25 bp)
TATTTTAGTTGATTATGAATTTCCT
LOC_Os09g28730
Target Sequence 
GGCGACAAGGTCAGCGGCGTGGTGCTCCTCCACCCCTACTTCTGGGGGAAGGACCCCGTGGGCGGCGAGTCCNCCGACGC
CGGCTACCGCGGCTNGTTCCACGGCACGTGGGAGTTCGTCAGCGCCGGCAAGCTCGGCCTCGACCACCCGTGNGTCAACC
CNCNGGCGTCGCCGGAGGAGTGGAGGCAGCTCGGGGCCGGCCGCGTCCTGGTCACTNCGGCGGAGCACTGCTGGTTCGTG
GAGAGGGCGCGCGCGTACGCGGAGGGGATCAAGAAGTGCGGGTGGGACGGCGAGGTGGAGCTCCACGAGACCGATGGCGA
GGGCCATGTCTTCTTCTTGCCCAAGCCCGACTGCGACAATNCCGTCAAGGAGCTCGCCGTCGTGNCCGATTTCNTCCGGC
GCTGTTGAANCCANCCGCTTCGGTTATCCCTCGTGTCGCCGGTGAGCNATTATACTNCTNCNACTCGTANCTAGTAATAA
AGGGAGGAATATNTNCTGTCTATGATNTNGATTCTCATTGATGATTTGCATCANTGAAGNGGAAAAGAAAAGGAATATTT
TAGTTGATTATGAATTTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49327.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis