Browse Element(s) Details


OsAffx.6431.1.S1_at

Description tigr:9637.m02526
TID=OsAffx.6431.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2870011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28660Os.48379.1.A1_x_at11/119+17426502..17427686esterase, putative, expressed
LOC_Os09g28670OsAffx.17950.1.S1_at8/119+17430825..17435611hypothetical protein
LOC_Os09g28670Os.28346.1.S1_x_at6/119+17430825..17435611hypothetical protein
LOC_Os09g28670Os.50043.1.A1_at1/119+17430825..17435611hypothetical protein
LOC_Os09g28680OsAffx.17950.1.S1_at11/119+17437482..17445054retrotransposon protein, putative, unclassified
LOC_Os09g28680Os.28346.1.S1_x_at7/119+17437482..17445054retrotransposon protein, putative, unclassified
LOC_Os09g28680Os.28346.3.S1_x_at6/119+17437482..17445054retrotransposon protein, putative, unclassified
LOC_Os09g28680Os.28346.5.S1_x_at1/119+17437482..17445054retrotransposon protein, putative, unclassified
LOC_Os09g28690Os.19954.1.S1_at11/119+17446934..174485892-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28700OsAffx.6431.1.S1_at11/119+17449768..17450732hypothetical protein
LOC_Os09g28710OsAffx.6432.1.S1_at11/119+17452709..17454354expressed protein
LOC_Os09g28720Os.24753.1.S1_at11/119+17457984..174593732-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28730Os.49327.1.S1_x_at11/119+17459641..17461069esterase, putative, expressed
LOC_Os09g28740Os.12967.2.A2_at11/119+17466118..174684252-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28740Os.12967.2.A1_at11/119+17466118..174684252-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28750Os.11109.1.S1_at11/119+17470047..174712082-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28760OsAffx.30066.1.S1_at11/119+17472041..174725772-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28770OsAffx.17951.1.S1_at11/119+17475730..17478575Patatin-like phospholipase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6431.1.S1_at--543--1031Chr09:17450641..17450665 (25 bp)
AGGTCAGCTTCGTGGTGATAGAACC
LOC_Os09g28700
OsAffx.6431.1.S1_at--334--291Chr09:17450624..17450648 (25 bp)
ATAGAACCCGTGCAGGGTCGATCCG
LOC_Os09g28700
OsAffx.6431.1.S1_at--15--6711Chr09:17450591..17450615 (25 bp)
GTTCCGCCAAACCTTGAAGTACAGC
LOC_Os09g28700
OsAffx.6431.1.S1_at--416--6371Chr09:17450535..17450559 (25 bp)
GATCCATTACAAGACTGCTCCATTC
LOC_Os09g28700
OsAffx.6431.1.S1_at--334--131Chr09:17450044..17450538 (25 bp)
ATTCACAGGTTGGTTTCAGTTCGGA
LOC_Os09g28700
OsAffx.6431.1.S1_at--230--3311Chr09:17449999..17450023 (25 bp)
CACAGCACAGCATCGATGGCACAGA
LOC_Os09g28700
OsAffx.6431.1.S1_at--452--6231Chr09:17449985..17450009 (25 bp)
GATGGCACAGAAGGCGCTACCTAAG
LOC_Os09g28700
OsAffx.6431.1.S1_at--891--6811Chr09:17449960..17449984 (25 bp)
GTTTATTAATAGATCCTGCCGGCAG
LOC_Os09g28700
OsAffx.6431.1.S1_at--274--2291Chr09:17449901..17449925 (25 bp)
AAATGATCATCCTCGGCACCGAAAG
LOC_Os09g28700
OsAffx.6431.1.S1_at--446--1691Chr09:17449878..17449902 (25 bp)
AGCCTATCATCAACCGAGATCTTCG
LOC_Os09g28700
OsAffx.6431.1.S1_at--548--6411Chr09:17449861..17449885 (25 bp)
GATCTTCGCGATCGGTAATGGTGAT
LOC_Os09g28700
Target Sequence 
AGGTCAGCTTCGTGGTGATAGAACCCGTGCAGGGTCGATCCGACACATCGGTTCCGCCAAACCTTGAAGTACAGCAGGAT
ACGATAGTGAGGCTGATGCACATTCAGATCCATTACAAGACTGCTCCATTCACAGGTTGGTTTCAGTTCGGAATTATTGG
GTTTGGTGGCGCCACAGCACAGCATCGATGGCACAGAAGGCGCTACCTAAGGTTTATTAATAGATCCTGCCGGCAGTATA
ACCCGATGACAAAGGAAGCACCAAATAGGCAAATGATCATCCTCGGCACCGAAAGCCTATCATCAACCGAGATCTTCGCG
ATCGGTAATGGTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6431.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis