Browse Element(s) Details


OsAffx.30066.1.S1_at

Description tigr:9637.m02532
TID=OsAffx.30066.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2876011/112-Hydroxyisoflavanone dehydratase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28690Os.19954.1.S1_at11/119+17446934..174485892-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28700OsAffx.6431.1.S1_at11/119+17449768..17450732hypothetical protein
LOC_Os09g28710OsAffx.6432.1.S1_at11/119+17452709..17454354expressed protein
LOC_Os09g28720Os.24753.1.S1_at11/119+17457984..174593732-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28730Os.49327.1.S1_x_at11/119+17459641..17461069esterase, putative, expressed
LOC_Os09g28740Os.12967.2.A2_at11/119+17466118..174684252-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28740Os.12967.2.A1_at11/119+17466118..174684252-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28750Os.11109.1.S1_at11/119+17470047..174712082-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28760OsAffx.30066.1.S1_at11/119+17472041..174725772-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28770OsAffx.17951.1.S1_at11/119+17475730..17478575Patatin-like phospholipase family protein, expressed
LOC_Os09g28780OsAffx.17952.1.S1_x_at11/119+17480452..17480742hypothetical protein
LOC_Os09g28780OsAffx.17952.1.S1_at11/119+17480452..17480742hypothetical protein
LOC_Os09g28790NANA9+17488301..17489681retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g28800OsAffx.17953.1.S1_x_at11/119+17494021..17494374hypothetical protein
LOC_Os09g28800OsAffx.17953.1.S1_at11/119+17494021..17494374hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30066.1.S1_at--172--7351Chr09:17472074..17472098 (25 bp)
GTGAAGGTGAACTCGCTCGTCCTGA
LOC_Os09g28760
OsAffx.30066.1.S1_at--581--8851Chr09:17472096..17472120 (25 bp)
TGATCCATCCCTACTTCCTGGGCGG
LOC_Os09g28760
OsAffx.30066.1.S1_at--166--5751Chr09:17472122..17472146 (25 bp)
GACGGCGATGGCTACTCCGAGTCAG
LOC_Os09g28760
OsAffx.30066.1.S1_at--769--1991Chr09:17472135..17472159 (25 bp)
ACTCCGAGTCAGACGAGATGGGCAT
LOC_Os09g28760
OsAffx.30066.1.S1_at--667--3491Chr09:17472157..17472181 (25 bp)
CATGGCGTTGCTGCGCGAGCTGATC
LOC_Os09g28760
OsAffx.30066.1.S1_at--513--6231Chr09:17472248..17472272 (25 bp)
GATGGCGCACCCAGTCTGGCCGTGC
LOC_Os09g28760
OsAffx.30066.1.S1_at--538--9131Chr09:17472270..17472294 (25 bp)
TGCTGGGATGCCGTCGTGCTCTGAT
LOC_Os09g28760
OsAffx.30066.1.S1_at--269--4251Chr09:17472280..17472304 (25 bp)
CCGTCGTGCTCTGATTTGCATTGGA
LOC_Os09g28760
OsAffx.30066.1.S1_at--88--851Chr09:17472408..17472432 (25 bp)
ATGGCTTCCATCTCTTGTGGCCGAC
LOC_Os09g28760
OsAffx.30066.1.S1_at--1051--8651Chr09:17472423..17472447 (25 bp)
TGTGGCCGACATGTACTCAGGCGGA
LOC_Os09g28760
OsAffx.30066.1.S1_at--532--9891Chr09:17472436..17472460 (25 bp)
TACTCAGGCGGAGGCACAATTACGG
LOC_Os09g28760
Target Sequence 
GTGAAGGTGAACTCGCTCGTCCTGATCCATCCCTACTTCCTGGGCGGCGACGGCGATGGCTACTCCGAGTCAGACGAGAT
GGGCATGGCGTTGCTGCGCGAGCTGATCCGGCTGTGGCCGGTGGTCTGCCCAGGGACGAGCGGGTGCGACGACCCGTGGA
TCAACCCGATGGCGGATGGCGCACCCAGTCTGGCCGTGCTGGGATGCCGTCGTGCTCTGATTTGCATTGGAGGGAAGGAT
GCAATGAGGGATAGAGGAAGGCTGTATTGTGAGAAATTGAGGGAATGTGGGTGGCGAGGGGAGGTGGAGATCTGGGAGGC
AGATGGGCAGGGCCATGGCTTCCATCTCTTGTGGCCGACATGTACTCAGGCGGAGGCACAATTACGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30066.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis