Browse Element(s) Details


Os.11109.1.S1_at

Description gb:AK064734.1
DB_XREF= gi:32974752
TID=Os.11109.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11109 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-120-C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-120-C05, full insert sequence.
FL= gb:AK064734.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2875011/112-Hydroxyisoflavanone dehydratase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28680OsAffx.17950.1.S1_at11/119+17437482..17445054retrotransposon protein, putative, unclassified
LOC_Os09g28680Os.28346.1.S1_x_at7/119+17437482..17445054retrotransposon protein, putative, unclassified
LOC_Os09g28680Os.28346.3.S1_x_at6/119+17437482..17445054retrotransposon protein, putative, unclassified
LOC_Os09g28680Os.28346.5.S1_x_at1/119+17437482..17445054retrotransposon protein, putative, unclassified
LOC_Os09g28690Os.19954.1.S1_at11/119+17446934..174485892-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28700OsAffx.6431.1.S1_at11/119+17449768..17450732hypothetical protein
LOC_Os09g28710OsAffx.6432.1.S1_at11/119+17452709..17454354expressed protein
LOC_Os09g28720Os.24753.1.S1_at11/119+17457984..174593732-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28730Os.49327.1.S1_x_at11/119+17459641..17461069esterase, putative, expressed
LOC_Os09g28740Os.12967.2.A2_at11/119+17466118..174684252-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28740Os.12967.2.A1_at11/119+17466118..174684252-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28750Os.11109.1.S1_at11/119+17470047..174712082-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28760OsAffx.30066.1.S1_at11/119+17472041..174725772-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28770OsAffx.17951.1.S1_at11/119+17475730..17478575Patatin-like phospholipase family protein, expressed
LOC_Os09g28780OsAffx.17952.1.S1_x_at11/119+17480452..17480742hypothetical protein
LOC_Os09g28780OsAffx.17952.1.S1_at11/119+17480452..17480742hypothetical protein
LOC_Os09g28790NANA9+17488301..17489681retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g28800OsAffx.17953.1.S1_x_at11/119+17494021..17494374hypothetical protein
LOC_Os09g28800OsAffx.17953.1.S1_at11/119+17494021..17494374hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11109.1.S1_at--808--3211Chr09:17470528..17470552 (25 bp)
CAAGGTCCCCTCAGAGGACTGGGAC
LOC_Os09g28750
Os.11109.1.S1_at--653--1771Chr09:17470449..17470473 (25 bp)
ACCGGCGTCGACGATCCGTGGATCA
LOC_Os09g28750
Os.11109.1.S1_at--1104--9191Chr09:17470247..17470271 (25 bp)
TCCACCTGATGGACTTCAACGGCGA
LOC_Os09g28750
Os.11109.1.S1_at--1096--4311Chr09:17470199..17470223 (25 bp)
CCATTGCTGAGTTCGTAAATCGGTA
LOC_Os09g28750
Os.11109.1.S1_at--979--9431Chr09:17470180..17470204 (25 bp)
TCGGTAGAGAATCCAATGGCCTCTT
LOC_Os09g28750
Os.11109.1.S1_at--714--871Chr09:17470165..17470189 (25 bp)
ATGGCCTCTTGGGTAACTGTTGCAT
LOC_Os09g28750
Os.11109.1.S1_at--942--2551Chr09:17470151..17470175 (25 bp)
AACTGTTGCATTGGGCATGCTGCTG
LOC_Os09g28750
Os.11109.1.S1_at--737--4771Chr09:17470133..17470157 (25 bp)
GCTGCTGTCTATTGCTATTGCTGTA
LOC_Os09g28750
Os.11109.1.S1_at--808--6791Chr09:17470102..17470126 (25 bp)
GTTATTTGATTTATGCTGATTTCGC
LOC_Os09g28750
Os.11109.1.S1_at--637--6531Chr09:17470085..17470109 (25 bp)
GATTTCGCCTAGTATGAATCCATGT
LOC_Os09g28750
Os.11109.1.S1_at--1075--751Chr09:17470051..17470075 (25 bp)
ATGTCTATTGACACACTACATTTCA
LOC_Os09g28750
Target Sequence 
CAAGGTCCCCTCAGAGGACTGGGACCCGGCGATGGCGGAGAACGTGGTGAAGATGTGGAGCGTCGTGTGCCCGGCGACCA
CCGGCGTCGACGATCCGTGGATCAACCCGCTCGCCGACGGCGCGCCGGGGTTGGAAGGGCTGGCCTGCGGCCGCGTGCTC
GTGTGCCTCGCGGAGAAGGATGTGATCCGCGACCGCGGCCGCGCGTACTGCGAGGGGCTTAAGGCGAGCGGGTGGGCGGG
GGAGGTGGAGGTCGTCGAGGTGGCCGGCCATGNNNNNTGCTTCCACCTGATGGACTTCAACGGCGACGAGGCCGTCAGGC
NGGNANCGACGCCATTGCTGAGTTCGTAAATCGGTAGAGAATCCAATGGCCTCTTGGGTAACTGTTGCATTGGGCATGCT
GCTGTCTATTGCTATTGCTGTATGATTTGTTATTTGATTTATGCTGATTTCGCCTAGTATGAATCCATGTAAAACACAGA
TGTCTATTGACACACTACATTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11109.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis