Browse Element(s) Details


OsAffx.6432.1.S1_at

Description tigr:9637.m02527
TID=OsAffx.6432.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2871011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28670OsAffx.17950.1.S1_at8/119+17430825..17435611hypothetical protein
LOC_Os09g28670Os.28346.1.S1_x_at6/119+17430825..17435611hypothetical protein
LOC_Os09g28670Os.50043.1.A1_at1/119+17430825..17435611hypothetical protein
LOC_Os09g28680OsAffx.17950.1.S1_at11/119+17437482..17445054retrotransposon protein, putative, unclassified
LOC_Os09g28680Os.28346.1.S1_x_at7/119+17437482..17445054retrotransposon protein, putative, unclassified
LOC_Os09g28680Os.28346.3.S1_x_at6/119+17437482..17445054retrotransposon protein, putative, unclassified
LOC_Os09g28680Os.28346.5.S1_x_at1/119+17437482..17445054retrotransposon protein, putative, unclassified
LOC_Os09g28690Os.19954.1.S1_at11/119+17446934..174485892-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28700OsAffx.6431.1.S1_at11/119+17449768..17450732hypothetical protein
LOC_Os09g28710OsAffx.6432.1.S1_at11/119+17452709..17454354expressed protein
LOC_Os09g28720Os.24753.1.S1_at11/119+17457984..174593732-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28730Os.49327.1.S1_x_at11/119+17459641..17461069esterase, putative, expressed
LOC_Os09g28740Os.12967.2.A2_at11/119+17466118..174684252-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28740Os.12967.2.A1_at11/119+17466118..174684252-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28750Os.11109.1.S1_at11/119+17470047..174712082-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28760OsAffx.30066.1.S1_at11/119+17472041..174725772-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28770OsAffx.17951.1.S1_at11/119+17475730..17478575Patatin-like phospholipase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6432.1.S1_at--1149--4471Chr09:17453258..17453282 (25 bp)
GCCGGCGATGGCAATGCAGCCACCT
LOC_Os09g28710
OsAffx.6432.1.S1_at--983--8211Chr09:17453249..17453273 (25 bp)
GGCAATGCAGCCACCTCGGAGGAAG
LOC_Os09g28710
OsAffx.6432.1.S1_at--725--3011Chr09:17453246..17453270 (25 bp)
AATGCAGCCACCTCGGAGGAAGACT
LOC_Os09g28710
OsAffx.6432.1.S1_at--959--1691Chr09:17453241..17453265 (25 bp)
AGCCACCTCGGAGGAAGACTGGGCC
LOC_Os09g28710
OsAffx.6432.1.S1_at--1054--8931Chr09:17453205..17453229 (25 bp)
TGACGACGCAGCCACTGCGGATAAG
LOC_Os09g28710
OsAffx.6432.1.S1_at--1070--5071Chr09:17453198..17453222 (25 bp)
GCAGCCACTGCGGATAAGGATCGGA
LOC_Os09g28710
OsAffx.6432.1.S1_at--655--1691Chr09:17453196..17453220 (25 bp)
AGCCACTGCGGATAAGGATCGGAAG
LOC_Os09g28710
OsAffx.6432.1.S1_at--205--4931Chr09:17453005..17453029 (25 bp)
GCTTGTCCGCGCGTTGGCCAGGAGG
LOC_Os09g28710
OsAffx.6432.1.S1_at--708--4391Chr09:17452797..17452821 (25 bp)
GCCACCCGGCTCTCTACGGGTGGAA
LOC_Os09g28710
OsAffx.6432.1.S1_at--77--4771Chr09:17452789..17452813 (25 bp)
GCTCTCTACGGGTGGAAAAGGAAGA
LOC_Os09g28710
OsAffx.6432.1.S1_at--468--7491Chr09:17452740..17452764 (25 bp)
GTGGTATTGGTGAGACCCAAACTTT
LOC_Os09g28710
Target Sequence 
GCCGGCGATGGCAATGCAGCCACCTCGGAGGAAGACTGGGCCGGCACCGACGATGACGACGCAGCCACTGCGGATAAGGA
TCGGAAGGGGTGAAGAAGAGGGGAGGGGGAGAGGGGAGCTCGAGGTCGATCCGCGCCGTCGCTTGGGCCACACCGCTGCC
ACCGTCGTTGGGGGTGGAGGAGAGGGCGCCGCCGCTACTCCGCTCGACAGCCGCCGTAGCGAGGAGGAGGAGAGGAGTGG
TGGTCGCCGCGGAGCTTGTCCGCGCGTTGGCCAGGAGGGGCGCCCGTCAAAGGAGGAGATAAGGGGCGTCGACCGGAGCT
GGAAGAAGAGGGAAGCTGGGGAAGAAGGAGCGGCGGCGCGGTGGGGTGAGCGGCCGCCGGATCTGGCCGCCCCTCCACCG
CTTCGACCGGCGCCGTCGCCGCCCCGCCACCGCTCCGCCCGGTGCCGTCGCCGCTCAAGCTGCCACCCGGCTCTCTACGG
GTGGAAAAGGAAGAGAGGGGAGAGGGAAAAGTGGAAAAGTGGTATTGGTGAGACCCAAACTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6432.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis