Browse Element(s) Details


Os.49181.1.S1_at

Description gb:AK060708.1
DB_XREF= gi:32970726
TID=Os.49181.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49181 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-030-H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-030-H09, full insert sequence.
FL= gb:AK060708.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2889011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28850Os.49127.1.S1_at11/119+17533413..17536817expressed protein
LOC_Os09g28860OsAffx.17955.1.S1_at11/119+17541290..17542005Late embryogenesis abundant protein D-34, putative
LOC_Os09g28869NANA9+17543887..17544416NA
LOC_Os09g28880Os.50419.1.S2_at11/119+17549265..17552888uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os09g28880Os.50419.1.S1_x_at11/119+17549265..17552888uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os09g28890Os.49181.1.S1_at11/119+17555973..17557590transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os09g28900NANA9+17564470..17565196Helix-loop-helix DNA-binding domain containing protein
LOC_Os09g28910Os.19131.1.A1_at11/119+17566631..17571326Carbonic anhydrase family protein, expressed
LOC_Os09g28910OsAffx.30069.1.S1_at11/119+17566631..17571326Carbonic anhydrase family protein, expressed
LOC_Os09g28920NANA9+17576912..17577926expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49181.1.S1_at--1077--10051Chr09:17557041..17557065 (25 bp)
TAGTGCTGCCGTGGAGGTGCAATCT
LOC_Os09g28890
Os.49181.1.S1_at--194--7771Chr09:17557056..17557080 (25 bp)
GGTGCAATCTGTGCCGAAACCAGCG
LOC_Os09g28890
Os.49181.1.S1_at--926--7871Chr09:17557207..17557231 (25 bp)
GGTTATTCGTTTGATCCTGCTATCA
LOC_Os09g28890
Os.49181.1.S1_at--1147--71Chr09:17557272..17557296 (25 bp)
ATTCGTGGTTGACAGGATCCTACAT
LOC_Os09g28890
Os.49181.1.S1_at--732--10351Chr09:17557329..17557353 (25 bp)
TTTTTCAGGCAGTCTTGCTCAGTTG
LOC_Os09g28890
Os.49181.1.S1_at--1015--9071Chr09:17557344..17557368 (25 bp)
TGCTCAGTTGCTGGGTTGTACTACC
LOC_Os09g28890
Os.49181.1.S1_at--86--1751Chr09:17557366..17557390 (25 bp)
ACCTTGCTGCTCTCATGCTTTAGAT
LOC_Os09g28890
Os.49181.1.S1_at--779--6651Chr09:17557431..17557455 (25 bp)
GTTGAGCTAGCTGTTCTGATCTAAG
LOC_Os09g28890
Os.49181.1.S1_at--337--6491Chr09:17557466..17557490 (25 bp)
GATAGCGATTTTAGTACCGTGCATT
LOC_Os09g28890
Os.49181.1.S1_at--801--351Chr09:17557516..17557540 (25 bp)
ATAAGCTCTTCTCTGCATAGGATTG
LOC_Os09g28890
Os.49181.1.S1_at--67--6071Chr09:17557562..17557586 (25 bp)
GAGTTTTATTTTCCCAGTCATTTAT
LOC_Os09g28890
Target Sequence 
TAGTGCTGCCGTGGAGGTGCAATCTGTGCCGAAACCAGCGAAACCCGTGAGAGTGAAGGTGGGCGCGAAGAAGCGAGGCC
GTCCCAAAGGCAGCAAGAACAAGAAGAATTTGTGAATGATACCAATGAAGGTGATTGGTATGATCATAGATCAGATGGGT
TTGTTGGGTTATTCGTTTGATCCTGCTATCATTGTCATCGACTGAAACGTTTATCTGTAGGTTGAATGCTAATTCGTGGT
TGACAGGATCCTACATTGAGAAGCACTGCAATGGTGATAGAAACTTAGTTTTTCAGGCAGTCTTGCTCAGTTGCTGGGTT
GTACTACCTTGCTGCTCTCATGCTTTAGATGCAGTTAGCTGCTGTATGTTGTCTAATTTCATTGACTTCAGTTGAGCTAG
CTGTTCTGATCTAAGATTATTAGGAGATAGCGATTTTAGTACCGTGCATTGTAAATTTTGAAATTTGATGCTACTATAAG
CTCTTCTCTGCATAGGATTGCAGACTTGCAGCAATGAATGAGAGTTTTATTTTCCCAGTCATTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49181.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis