Browse Element(s) Details


OsAffx.30069.1.S1_at

Description tigr:9637.m02551
TID=OsAffx.30069.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=carbonate dehydratase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2891011/11Carbonic anhydrase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28860OsAffx.17955.1.S1_at11/119+17541290..17542005Late embryogenesis abundant protein D-34, putative
LOC_Os09g28869NANA9+17543887..17544416NA
LOC_Os09g28880Os.50419.1.S2_at11/119+17549265..17552888uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os09g28880Os.50419.1.S1_x_at11/119+17549265..17552888uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os09g28890Os.49181.1.S1_at11/119+17555973..17557590transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os09g28900NANA9+17564470..17565196Helix-loop-helix DNA-binding domain containing protein
LOC_Os09g28910Os.19131.1.A1_at11/119+17566631..17571326Carbonic anhydrase family protein, expressed
LOC_Os09g28910OsAffx.30069.1.S1_at11/119+17566631..17571326Carbonic anhydrase family protein, expressed
LOC_Os09g28920NANA9+17576912..17577926expressed protein
LOC_Os09g28930NANA9+17587283..17588287DNA-binding protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0015976biological_processcarbon utilization
GO:0004089molecular_functioncarbonate dehydratase activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30069.1.S1_at--337--5151Chr09:17568556..17568580 (25 bp)
GCAATCTAGGTAAAGTTCTTCCCAT
LOC_Os09g28910
OsAffx.30069.1.S1_at--1111--10551Chr09:17568541..17568565 (25 bp)
TTCTTCCCATCTTTTGCATTACGTA
LOC_Os09g28910
OsAffx.30069.1.S1_at--1061--4931Chr09:17568526..17568550 (25 bp)
GCATTACGTATCCTTTTATTTTTCT
LOC_Os09g28910
OsAffx.30069.1.S1_at--200--7931Chr09:17568332..17568356 (25 bp)
GGATAATTGTTACTACCTCAGTTCA
LOC_Os09g28910
OsAffx.30069.1.S1_at--69--6751Chr09:17568312..17568336 (25 bp)
GTTCATTTTTACTACTTTATATCCT
LOC_Os09g28910
OsAffx.30069.1.S1_at--537--771Chr09:17568282..17568306 (25 bp)
ATGTGCTTTAATTTTGTCGTTAGAA
LOC_Os09g28910
OsAffx.30069.1.S1_at--333--2532Chr08:7328889..7328910 (22 bp)
AACTAGTTCAATGCCCATGCTTTGC
NONE
OsAffx.30069.1.S1_at--950--3511Chr09:17568232..17568256 (25 bp)
CATGCTTTGCTATGGGAACAGAAAA
LOC_Os09g28910
OsAffx.30069.1.S1_at--794--7111Chr09:17568071..17568095 (25 bp)
GTCAGTGAACATTTACCTAGTTGGG
LOC_Os09g28910
OsAffx.30069.1.S1_at--653--9971Chr09:17568058..17568082 (25 bp)
TACCTAGTTGGGTTCTTGGGTTGCT
LOC_Os09g28910
OsAffx.30069.1.S1_at--979--9571Chr09:17568045..17568069 (25 bp)
TCTTGGGTTGCTTAGGGAATGGACA
LOC_Os09g28910
Target Sequence 
GCAATCTAGGTAAAGTTCTTCCCATCTTTTGCATTACGTATCCTTTTATTTTTCTTTTACATCATGCATATATGGTGTTT
GTTTCTTGAACAGAAGCTTTATCAGAGATTGGGTGTCAATTGCAAAGAGTGCAAGGTTAAGTACGGAAGCAGCAGCTGGA
AATTTGAATTTTGAATTACAGTGCAAACATTGTGAAAAGGTGATTTTGATTTTCTTAGTTTGATGGATAATTGTTACTAC
CTCAGTTCATTTTTACTACTTTATATCCTAGAATATGTGCTTTAATTTTGTCGTTAGAAATATCTTCATAACTAGTTCAA
TGCCCATGCTTTGCTATGGGAACAGAAAAACAGCAAGAATGTTTAAACTGCATCTGAAATAATGATGTTATAATAATTTT
TAAATCACTGGGAAACTAAATTTTCTGGTGTATATTAGTAAGATTGAAAGTAAAAGTACAAAACACATTGTTCTATAGAT
AGTAAGTCAGTGAACATTTACCTAGTTGGGTTCTTGGGTTGCTTAGGGAATGGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30069.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis