Browse Element(s) Details


Os.49137.1.S1_at

Description gb:AK110646.1
DB_XREF= gi:32995855
TID=Os.49137.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49137 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-169-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-169-D06, full insert sequence.
FL= gb:AK110646.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1287911/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12860OsAffx.25077.1.S1_at11/113+6910822..6912441Homeobox associated leucine zipper family protein, expressed
LOC_Os03g12860Os.49754.1.S1_x_at10/113+6910822..6912441Homeobox associated leucine zipper family protein, expressed
LOC_Os03g12870Os.27542.1.A1_at1/113+6919618..6921929hypothetical protein
LOC_Os03g12879Os.49137.1.S1_at11/113+6922092..6923188expressed protein
LOC_Os03g12890Os.10150.1.S1_at11/113+6927108..6930064Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
LOC_Os03g12900Os.28127.2.S1_at11/113+6929972..6936503Squalene monooxygenase, putative, expressed
LOC_Os03g12900Os.28127.1.S1_at11/113+6929972..6936503Squalene monooxygenase, putative, expressed
LOC_Os03g12900OsAffx.8676.1.S1_at1/113+6929972..6936503Squalene monooxygenase, putative, expressed
LOC_Os03g12910Os.20969.1.S1_at11/113+6936767..6941707Squalene monooxygenase, putative, expressed
LOC_Os03g12920NANA3+6945583..6946134hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49137.1.S1_at--404--1451Chr03:6922317..6922341 (25 bp)
AGAAGAGAACCGAGCGACACGATGC
LOC_Os03g12879
Os.49137.1.S1_at--121--5451Chr03:6922311..6922335 (25 bp)
GAACCGAGCGACACGATGCGGCTGT
LOC_Os03g12879
Os.49137.1.S1_at--582--611Chr03:6922296..6922320 (25 bp)
ATGCGGCTGTCGGTGGAGAAAAATC
LOC_Os03g12879
Os.49137.1.S1_at--671--1351Chr03:6922232..6922256 (25 bp)
AGAGACTGACAGTGGGTCCCAGGTT
LOC_Os03g12879
Os.49137.1.S1_at--951--3851Chr03:6922227..6922251 (25 bp)
CTGACAGTGGGTCCCAGGTTGTTTA
LOC_Os03g12879
Os.49137.1.S1_at--1107--7693Chr05:25589842..25589866 (25 bp)
GGGTGTACATATACTTCTTTTGGTT
NONE
Os.49137.1.S1_at--1073--10171Chr03:6922192..6922216 (25 bp)
TATACTTCTTTTGGTTACTCTAGGG
LOC_Os03g12879
Os.49137.1.S1_at--1022--10831Chr03:6922182..6922206 (25 bp)
TTGGTTACTCTAGGGTTCAAAATAT
LOC_Os03g12879
Os.49137.1.S1_at--637--1011Chr03:6922146..6922170 (25 bp)
AGGTTTTATAATACAAGGGCTGACA
LOC_Os03g12879
Os.49137.1.S1_at--1056--7571Chr03:6922108..6922132 (25 bp)
GGGCTGATATGCAAAATACGTTTTG
LOC_Os03g12879
Os.49137.1.S1_at--28--313Chr10:4362891..4362910 (20 bp)
ATACGTTTTGGAGTGGTTTCCACTG
NONE
Target Sequence 
AGAAGAGAACCGAGCGACACGATGCGGCTGTCGGTGGAGAAAAATCGAAGAGAGAGAGAGGGGAATAAAAAAGAGAGGGA
TGGGAAGAGACTGACAGTGGGTCCCAGGTTGTTTAGGGGTGTACATATACTTCTTTTGGTTACTCTAGGGTTCAAAATAT
AAAGTTTCAATAGGTTTTATAATACAAGGGCTGACATATAAATAGATAGGGGCTGATATGCAAAATACGTTTTGGAGTGG
TTTCCACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49137.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis