Browse Element(s) Details


Os.49170.1.S1_at

Description gb:AK071843.1
DB_XREF= gi:32981866
TID=Os.49170.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.49170 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-301-C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023117M08, full insert sequence.
FL= gb:AK104174.1 gb:AK071843.1 gb:AK067462.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2968011/11EARLY flowering 4 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g29650NANA3+16858656..16865217retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29660Os.46995.1.S1_x_at1/113+16865537..16868449retrotransposon protein, putative, unclassified
LOC_Os03g29680Os.49170.1.S1_at11/113+16875049..16877259EARLY flowering 4 protein, putative, expressed
LOC_Os03g29690OsAffx.13112.1.S1_at11/113+16879732..16880450hypothetical protein
LOC_Os03g29710OsAffx.16205.1.S1_at2/113+16887490..16890376hypothetical protein
LOC_Os03g29710OsAffx.25292.1.S1_at1/113+16887490..16890376hypothetical protein
LOC_Os03g29730Os.46091.1.S1_s_at11/113+16892625..16895830expressed protein
LOC_Os03g29740OsAffx.3365.1.S1_s_at11/113+16896148..16898314small nuclear ribonucleoprotein G, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009648biological_processphotoperiodism
GO:0009909biological_processregulation of flower development
GO:0042753biological_processpositive regulation of circadian rhythm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49170.1.S1_at--196--1831Chr03:16875501..16875525 (25 bp)
ACGCCGGCCACAAGCGTGTCAGGTC
LOC_Os03g29680
Os.49170.1.S1_at--796--4351Chr03:16875473..16875497 (25 bp)
CCACCTCGACTGAACAAGAACCATT
LOC_Os03g29680
Os.49170.1.S1_at--104--9531Chr03:16875449..16875473 (25 bp)
TCTCATTTTCTCAATTAACCACCTC
LOC_Os03g29680
Os.49170.1.S1_at--637--131Chr03:16875436..16875460 (25 bp)
ATTAACCACCTCCAATTCTCCAATT
LOC_Os03g29680
Os.49170.1.S1_at--1076--3151Chr03:16875410..16875434 (25 bp)
CAATTCCAATTTCGGCTAGCTTAGC
LOC_Os03g29680
Os.49170.1.S1_at--808--1551Chr03:16875388..16875412 (25 bp)
AGCTTAAAGATCGAGCTCTTGCTTG
LOC_Os03g29680
Os.49170.1.S1_at--255--2211Chr03:16875308..16875332 (25 bp)
ACAACTACTCCCGATGTTTCATATT
LOC_Os03g29680
Os.49170.1.S1_at--862--7851Chr03:16875155..16875179 (25 bp)
GGTAGTACAATCATCTTCGGTTCTT
LOC_Os03g29680
Os.49170.1.S1_at--62--431Chr03:16875146..16875170 (25 bp)
ATCATCTTCGGTTCTTTCTTGTAGC
LOC_Os03g29680
Os.49170.1.S1_at--436--6971Chr03:16875126..16875150 (25 bp)
GTAGCTGTTGTTTCATCTTGTTGTA
LOC_Os03g29680
Os.49170.1.S1_at--373--4391Chr03:16875060..16875084 (25 bp)
GCCAATACAAGAGAGTGAGCACTTC
LOC_Os03g29680
Target Sequence 
ACGCCGGCCACAAGCGTGTCAGGTCCACCCACCTCGACTGAACAAGAACCATTCTCATTTTCTCAATTAACCACCTCCAA
TTCTCCAATTCCAATTCCAATTTCGGCTAGCTTAGCTTAAAGATCGAGCTCTTGCTTGCTTGTATATCTAGCTATAATCT
ATAAATCTACATATGAGCAATTAACGCCCCCTCACAACTACTCCCGATGTTTCATATTATAAGACTTTCTAACATTTGCC
TACATTCATATATATGTTAATGAATCNAGACANATATGTGTGCCTAGATTCATTAACATCTGTATGAATGTGGGTAATGC
TAGAAAGTCTTATAACCTAAAACGNAGGTAGTACAATCATCTTCGGTTCTTTCTTGTAGCTGTTGTTTCATCTTGTTGTA
GCTGATATGATGAGCTATTATATGGATTTTGATGCAACAATGCCAATACAAGAGAGTGAGCACTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49170.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis