Browse Element(s) Details


Os.49171.1.A1_x_at

Description gb:AK100017.1
DB_XREF= gi:32985226
TID=Os.49171.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49171 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013144J12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013144J12, full insert sequence.
FL= gb:AK100017.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0763011/11BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07590Os.15606.1.S1_at11/111+3642389..3647164universal stress protein family protein, expressed
LOC_Os01g07590Os.15606.1.S2_at6/111+3642389..3647164universal stress protein family protein, expressed
LOC_Os01g07600Os.54010.1.S1_at11/111+3649075..3653252expressed protein
LOC_Os01g07600OsAffx.23151.1.S1_x_at5/111+3649075..3653252expressed protein
LOC_Os01g07610Os.53998.1.S1_at11/111+3658490..3661001pentatricopeptide, putative, expressed
LOC_Os01g07620Os.57176.1.S1_at10/111+3661844..3662846expressed protein
LOC_Os01g07630Os.49171.1.A1_x_at11/111+3664278..3669811BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os01g07630Os.49171.1.A1_at11/111+3664278..3669811BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os01g07640OsAffx.23152.1.S1_at11/111+3673105..3677462TPR Domain containing protein
LOC_Os01g07650NANA1+3678945..3679166hypothetical protein
LOC_Os01g07660Os.55117.2.S1_x_at11/111+3679748..3684209expressed protein
LOC_Os01g07660Os.55117.2.S1_at11/111+3679748..3684209expressed protein
LOC_Os01g07670OsAffx.23153.1.S1_at9/111+3686742..3689507hypothetical protein
LOC_Os01g07680OsAffx.23154.1.S1_at11/111+3691657..3692103hypothetical protein
LOC_Os01g07700Os.14395.1.S1_at11/111+3692957..3696520expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49171.1.A1_x_at--822--451Chr01:3664725..3664749 (25 bp)
ATCTCATCGTCCCAGAATGTCGGAG
LOC_Os01g07630
Os.49171.1.A1_x_at--676--8011Chr01:3664659..3664683 (25 bp)
GGAGGCATCACAGAACGTCGACACA
LOC_Os01g07630
Os.49171.1.A1_x_at--1037--10851Chr01:3664562..3664586 (25 bp)
TTGGAAGCCATGGAGCTCTCTGGAC
LOC_Os01g07630
Os.49171.1.A1_x_at--99--491Chr01:3664530..3664554 (25 bp)
ATCGGTGTCGATATTCGTTCTTTGC
LOC_Os01g07630
Os.49171.1.A1_x_at--484--8831Chr01:3664488..3664512 (25 bp)
TGATTAGAGCTCTTGAGCCGCCCAA
LOC_Os01g07630
Os.49171.1.A1_x_at--331--5871Chr01:3664431..3664455 (25 bp)
GAGCCATATTGTTGTCTATAGCCGA
LOC_Os01g07630
Os.49171.1.A1_x_at--925--291Chr01:3664414..3664438 (25 bp)
ATAGCCGAGGTGGTATTCATTTGTA
LOC_Os01g07630
Os.49171.1.A1_x_at--947--10431Chr01:3664376..3664400 (25 bp)
TTATGTGAGGTGAGCCCATCCTTGT
LOC_Os01g07630
Os.49171.1.A1_x_at--960--4171Chr01:3664362..3664386 (25 bp)
CCCATCCTTGTTGCACATCTATAGG
LOC_Os01g07630
Os.49171.1.A1_x_at--631--1211Chr01:3664291..3664315 (25 bp)
AGTTTTCTATTGGAGAGTCTCTGCT
LOC_Os01g07630
Os.49171.1.A1_x_at--302--8551Chr01:3664281..3664305 (25 bp)
TGGAGAGTCTCTGCTCCATTTTTCA
LOC_Os01g07630
Target Sequence 
ATCTCATCGTCCCAGAATGTCGGAGGTGATCAGAATGCTGGAAGGGGACGGTCTNNCGGAGAAATGGGAGGCATCACAGA
ACGTCGACACACCGAAATCCGNTTCNTCAGAGCTTCTACCCCCAAAATTCATGGATTTNGCNGCAGACGAATCCTCCNTT
GGCTTGGAAGCCATGGAGCTCTCTGGACCGAGGTGATCGGTGTCGATATTCGTTCTTTGCGACAAATGTGTTTGATTTGA
TTAGAGCTCTTGAGCCGCCCAACTAAGGGGGATGAGAATTTTCCAAATTGAGTAGAGCCATATTGTTGTCTATAGCCGAG
GTGGTATTCATTTGTACATACAGTAAGCATTATGTGAGGTGAGCCCATCCTTGTTGCACATCTATAGGTGGCAAAGAGAG
ATGAGATTGATGAGCAAATATAGAAAAAAAAAGAAGTTTTCTATTGGAGAGTCTCTGCTCCATTTTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49171.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis