Browse Element(s) Details


OsAffx.23153.1.S1_at

Description tigr:9629.m00699
TID=OsAffx.23153.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g076709/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07620Os.57176.1.S1_at10/111+3661844..3662846expressed protein
LOC_Os01g07630Os.49171.1.A1_x_at11/111+3664278..3669811BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os01g07630Os.49171.1.A1_at11/111+3664278..3669811BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os01g07640OsAffx.23152.1.S1_at11/111+3673105..3677462TPR Domain containing protein
LOC_Os01g07650NANA1+3678945..3679166hypothetical protein
LOC_Os01g07660Os.55117.2.S1_x_at11/111+3679748..3684209expressed protein
LOC_Os01g07660Os.55117.2.S1_at11/111+3679748..3684209expressed protein
LOC_Os01g07670OsAffx.23153.1.S1_at9/111+3686742..3689507hypothetical protein
LOC_Os01g07680OsAffx.23154.1.S1_at11/111+3691657..3692103hypothetical protein
LOC_Os01g07700Os.14395.1.S1_at11/111+3692957..3696520expressed protein
LOC_Os01g07710OsAffx.10956.1.S1_at11/111+3699250..3701525hypothetical protein
LOC_Os01g07720Os.16184.1.S1_at11/111+3702116..3705791ALG3 protein, expressed
LOC_Os01g07720OsAffx.24443.1.S1_at1/111+3702116..3705791ALG3 protein, expressed
LOC_Os01g07730Os.51043.1.S1_at11/111+3708014..3710455Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative, expressed
LOC_Os01g07740Os.7205.1.A1_at11/111+3710534..3715433DEAD/DEAH box helicase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23153.1.S1_at--1035--1991Chr01:3689258..3689282 (25 bp)
ACTCTCACGCTGTGGGCGGCCTACA
LOC_Os01g07670
OsAffx.23153.1.S1_at--1131--1651Chr01:3689096..3689120 (25 bp)
AGCCTCGGCGTCACCAGGGTGGCCA
LOC_Os01g07670
OsAffx.23153.1.S1_at--722--7231NONE
GTCGCGGCTTGTTCGCACATCAGAA
NONE
OsAffx.23153.1.S1_at--166--7391Chr01:3687831..3687855 (25 bp)
GTGATGAACAATTGACCGGTGCTCA
LOC_Os01g07670
OsAffx.23153.1.S1_at--128--3151NONE
AATTGACCGGTGCTCAACTGCGTCC
NONE
OsAffx.23153.1.S1_at--807--4291Chr01:3686998..3687022 (25 bp)
CCTCTCATGCTGTGGGCGGCTACAT
LOC_Os01g07670
OsAffx.23153.1.S1_at--1046--9871Chr01:3686982..3687002 (21 bp)
TACATGTCGCTGCTCATGCTGCGCG
LOC_Os01g07670
OsAffx.23153.1.S1_at--330--9231Chr01:3686860..3686884 (25 bp)
TCCTCGTGTTTCTTTCGTGCCTTGG
LOC_Os01g07670
OsAffx.23153.1.S1_at--793--9171Chr01:3686843..3686867 (25 bp)
TGCCTTGGCCTCAGCTTTGGCGTCA
LOC_Os01g07670
OsAffx.23153.1.S1_at--208--10231Chr01:3686828..3686852 (25 bp)
TTTGGCGTCACCTGGGTGGCCATTG
LOC_Os01g07670
OsAffx.23153.1.S1_at--452--10851Chr01:3686801..3686825 (25 bp)
TTGGATTGCGTTTACCTCGTCATCA
LOC_Os01g07670
Target Sequence 
ACTCTCACGCTGTGGGCGGCCTACATGTCGCTGCTCGCGCTGGTGAGCATGCACATGCGCCTCTTCCTGCCGCGCGCGCC
CGACGCCGTGCTCACGGACCTCCTCGACGTCGGCGCGGCACGGATCGGCATCCCGCTCGCGTTCCTCGCGTGCCTTGCTG
CCAGCCTCGGCGTCACCAGGGTGGCCATCGCCTTGGATTGCGTTTTCGTCGTCCTCATCGCCCACGTACTTGCCATCTGG
TCGCGGCTTGTTCGCACATCAGAACATGGTGATGAACAATTGACCGGTGCTCAACTGCGTCCGCCGCGACCTGTGGAGGC
TGACGCCTCTCATGCTGTGGGCGGCTACATGTCGCTGCTCATGCTGCGCGCGCCCTACGCCGTGCTCAAGGACCTCCTCG
ACGTCGGCGTGAAGCGGATCGGGATCGCCACCGTCCTCGTGTTTCTTTCGTGCCTTGGCCTCAGCTTTGGCGTCACCTGG
GTGGCCATTGCCTTGGATTGCGTTTACCTCGTCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23153.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis