Browse Element(s) Details


Os.16184.1.S1_at

Description gb:AK068405.1
DB_XREF= gi:32978423
TID=Os.16184.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.16184 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013149A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013149A07, full insert sequence.
FL= gb:AK068405.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0772011/11ALG3 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07640OsAffx.23152.1.S1_at11/111+3673105..3677462TPR Domain containing protein
LOC_Os01g07650NANA1+3678945..3679166hypothetical protein
LOC_Os01g07660Os.55117.2.S1_x_at11/111+3679748..3684209expressed protein
LOC_Os01g07660Os.55117.2.S1_at11/111+3679748..3684209expressed protein
LOC_Os01g07670OsAffx.23153.1.S1_at9/111+3686742..3689507hypothetical protein
LOC_Os01g07680OsAffx.23154.1.S1_at11/111+3691657..3692103hypothetical protein
LOC_Os01g07700Os.14395.1.S1_at11/111+3692957..3696520expressed protein
LOC_Os01g07710OsAffx.10956.1.S1_at11/111+3699250..3701525hypothetical protein
LOC_Os01g07720Os.16184.1.S1_at11/111+3702116..3705791ALG3 protein, expressed
LOC_Os01g07720OsAffx.24443.1.S1_at1/111+3702116..3705791ALG3 protein, expressed
LOC_Os01g07730Os.51043.1.S1_at11/111+3708014..3710455Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative, expressed
LOC_Os01g07740Os.7205.1.A1_at11/111+3710534..3715433DEAD/DEAH box helicase family protein, expressed
LOC_Os01g07750Os.10212.1.S1_at10/111+3716917..3719968expressed protein
LOC_Os01g07760Os.155.1.S1_a_at11/111+3721117..3725615Phospholipase D alpha 1 precursor, putative, expressed
LOC_Os01g07770Os.37754.1.S1_at6/111+3728952..3730732Peroxidase 25 precursor, putative

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16184.1.S1_at--236--4991Chr01:3703264..3703288 (25 bp)
GCATGAGGGTGGCTTGTTCCATTTC
LOC_Os01g07720
Os.16184.1.S1_at--769--6691Chr01:3703249..3703273 (25 bp)
GTTCCATTTCTTGCATTCCAGATTC
LOC_Os01g07720
Os.16184.1.S1_at--54--8091Chr01:3703206..3703230 (25 bp)
GGACAGTTAATTTTTGCCAAGCCCA
LOC_Os01g07720
Os.16184.1.S1_at--700--2631Chr01:3703188..3703212 (25 bp)
AAGCCCAAACTGTCAACTCTTAACA
LOC_Os01g07720
Os.16184.1.S1_at--257--3131Chr01:3703049..3703073 (25 bp)
AATTTCATTGGCATCGTGTGCGCAC
LOC_Os01g07720
Os.16184.1.S1_at--445--6071Chr01:3702583..3702607 (25 bp)
GAGTACCCCTATGCCAATGGAAAGA
LOC_Os01g07720
Os.16184.1.S1_at--616--6491Chr01:3702500..3702524 (25 bp)
GATAGGCTTTAGTTGTTTCTTCCCT
LOC_Os01g07720
Os.16184.1.S1_at--776--751Chr01:3702405..3702429 (25 bp)
ATGTCAATGCTCTTGCTGTCAGTAG
LOC_Os01g07720
Os.16184.1.S1_at--1031--7091Chr01:3702388..3702412 (25 bp)
GTCAGTAGGCTCTAGTTTCCTGGAT
LOC_Os01g07720
Os.16184.1.S1_at--648--7991Chr01:3702367..3702391 (25 bp)
GGATGATCATTTCGTCCTACCGAAC
LOC_Os01g07720
Os.16184.1.S1_at--26--9471Chr01:3702304..3702328 (25 bp)
TCTGGCAATTCTTTGTACGTCCATT
LOC_Os01g07720
Target Sequence 
GCATGAGGGTGGCTTGTTCCATTTCTTGCATTCCAGATTCAAAGATGCCACATCAATTGGACAGTTAATTTTTGCCAAGC
CCAAACTGTCAACTCTTAACAAAGAACATATTGTAACGGTCATGTTTGTTGGAAATTTCATTGGCATCGTGTGCGCACGA
NNNTNNCNNNNNNANNTNNNNTNCNGAGTACCCCTATGCCAATGGAAAGAAATGAAAAAACAGTATCGACAAGCACGGCA
CGGCAATATCATACAGTTTTAACTTTGAGATAGGCTTTAGTTGTTTCTTCCCTNTGTNTATACAGGCAAGATCAAGAAGG
GGTATGGAAATCTGAAGTTGTAATTCAACACACTGTATTTTTGATATGTCAATGCTCTTGCTGTCAGTAGGCTCTAGTTT
CCTGGATGATCATTTCGTCCTACCGAACATGTACCATAGATAACTTGTTAACAANNNNNNCATAGCAGCTGCTCTGGCAA
TTCTTTGTACGTCCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16184.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis