Browse Element(s) Details


Os.155.1.S1_a_at

Description gb:D73411.1
DB_XREF= gi:1020414
TID=Os.155.1
CNT=40
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.155 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for phospholipase D, complete cds.
PROD=phospholipase D
FL= gb:AK061865.1 gb:AK119523.1 gb:D73411.1 gb:AK100365.1 gb:AK066556.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0776011/11Phospholipase D alpha 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07700Os.14395.1.S1_at11/111+3692957..3696520expressed protein
LOC_Os01g07710OsAffx.10956.1.S1_at11/111+3699250..3701525hypothetical protein
LOC_Os01g07720Os.16184.1.S1_at11/111+3702116..3705791ALG3 protein, expressed
LOC_Os01g07720OsAffx.24443.1.S1_at1/111+3702116..3705791ALG3 protein, expressed
LOC_Os01g07730Os.51043.1.S1_at11/111+3708014..3710455Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative, expressed
LOC_Os01g07740Os.7205.1.A1_at11/111+3710534..3715433DEAD/DEAH box helicase family protein, expressed
LOC_Os01g07750Os.10212.1.S1_at10/111+3716917..3719968expressed protein
LOC_Os01g07760Os.155.1.S1_a_at11/111+3721117..3725615Phospholipase D alpha 1 precursor, putative, expressed
LOC_Os01g07770Os.37754.1.S1_at6/111+3728952..3730732Peroxidase 25 precursor, putative
LOC_Os01g07780NANA1+3732652..3733608Embryo-specific protein 3, containing protein, expressed
LOC_Os01g07790OsAffx.23155.1.S1_at11/111+3734695..3737487Polygalacturonase family protein, expressed
LOC_Os01g07800OsAffx.23156.1.S1_at11/111+3737645..3738814hypothetical protein
LOC_Os01g07810Os.6842.1.S1_at9/111+3739548..3741341expressed protein
LOC_Os01g07820Os.47463.1.S1_x_at5/111+3745725..3749422transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g07820Os.14491.2.S1_x_at4/111+3745725..3749422transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006631biological_processfatty acid metabolism
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0005634cellular_componentnucleus
GO:0005739cellular_componentmitochondrion
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0030136cellular_componentclathrin-coated vesicle
GO:0004630molecular_functionphospholipase D activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.155.1.S1_a_at--903--1951Chr01:3721945..3721969 (25 bp)
ACTGGGACATGTACTCCAGCGACGA
LOC_Os01g07760
Os.155.1.S1_a_at--60--3791Chr01:3721805..3721829 (25 bp)
CTCGGCGCCAAGTCGGATTACATGC
LOC_Os01g07760
Os.155.1.S1_a_at--487--9591Chr01:3721766..3721790 (25 bp)
TCATAGACGAGGAAGCACTACACTA
LOC_Os01g07760
Os.155.1.S1_a_at--992--2011Chr01:3721750..3721774 (25 bp)
ACTACACTACAATCTGCTGGCTTCT
LOC_Os01g07760
Os.155.1.S1_a_at--740--8731Chr01:3721723..3721747 (25 bp)
TGTCAGTCCTTCTGTACTTCTTCAG
LOC_Os01g07760
Os.155.1.S1_a_at--186--7851Chr01:3721684..3721708 (25 bp)
GGTATGGCCGTTGTTCAGAATTTCT
LOC_Os01g07760
Os.155.1.S1_a_at--613--191Chr01:3721665..3721689 (25 bp)
ATTTCTTCAGAATAGCAGTTGTTAC
LOC_Os01g07760
Os.155.1.S1_a_at--427--3451Chr01:3721614..3721638 (25 bp)
CAGTATCTGTGCATGGTTGAGTTGG
LOC_Os01g07760
Os.155.1.S1_a_at--691--8991Chr01:3721560..3721584 (25 bp)
TGAAGTTGTGATGCCGTTTGTAAGA
LOC_Os01g07760
Os.155.1.S1_a_at--910--3151Chr01:3721512..3721536 (25 bp)
AATTGGCATGATTGTACTTTGCACT
LOC_Os01g07760
Os.155.1.S1_a_at--996--2011Chr01:3721497..3721521 (25 bp)
ACTTTGCACTACTGTTTAGCGTTGT
LOC_Os01g07760
Target Sequence 
ACTGGGACATGTACTCCAGCGACGACCTCCAGCAGGACCTCCCTGGCCACCTCCTCAGCTACCCCATTGGCGTCGCCAGC
GATGGTGTGGTGACTGAGCTGCCCGGGATGGAGTACTTNCCTGACACACGGGCCCGCGTCCTCGGCGCCAAGTCGGATTA
CATGCCCCCCATCCTCACCTCATAGACGAGGAAGCACTACACTACAATCTGCTGGCTTCTCCTGTCAGTCCTTCTGTACT
TCTTCAGTNTGGTGGCGAGATGGTATGGCCGTTGTTCAGAATTTCTTCAGAATAGCAGTTGTTACAGTTGTGAATCATAA
AGTAATAAGTGCAGTATCTGTGCATGGTTGAGTTGGGAAGAAGATCGGGGATGCAATGATGCTTGTGAAGTTGTGATGCC
GTTTGTAAGATGGGAAGTTGGGAACTACTAAGTAATTGGCATGATTGTACTTTGCACTACTGTTTAGCGTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.155.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis