Browse Element(s) Details


OsAffx.23155.1.S1_at

Description tigr:9629.m00714
TID=OsAffx.23155.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Polygalacturonase (pectinase), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0779011/11Polygalacturonase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07730Os.51043.1.S1_at11/111+3708014..3710455Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative, expressed
LOC_Os01g07740Os.7205.1.A1_at11/111+3710534..3715433DEAD/DEAH box helicase family protein, expressed
LOC_Os01g07750Os.10212.1.S1_at10/111+3716917..3719968expressed protein
LOC_Os01g07760Os.155.1.S1_a_at11/111+3721117..3725615Phospholipase D alpha 1 precursor, putative, expressed
LOC_Os01g07770Os.37754.1.S1_at6/111+3728952..3730732Peroxidase 25 precursor, putative
LOC_Os01g07780NANA1+3732652..3733608Embryo-specific protein 3, containing protein, expressed
LOC_Os01g07790OsAffx.23155.1.S1_at11/111+3734695..3737487Polygalacturonase family protein, expressed
LOC_Os01g07800OsAffx.23156.1.S1_at11/111+3737645..3738814hypothetical protein
LOC_Os01g07810Os.6842.1.S1_at9/111+3739548..3741341expressed protein
LOC_Os01g07820Os.47463.1.S1_x_at5/111+3745725..3749422transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g07820Os.14491.2.S1_x_at4/111+3745725..3749422transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g07830NANA1+3752090..3755422transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g07840Os.46306.1.S1_x_at5/111+3761348..3771443transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g07840Os.45976.1.S1_x_at4/111+3761348..3771443transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0031225cellular_componentanchored to membrane
GO:0004650molecular_functionpolygalacturonase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23155.1.S1_at--59--5751Chr01:3736417..3736441 (25 bp)
GACGGCATAACCATGGCAATTTCTG
LOC_Os01g07790
OsAffx.23155.1.S1_at--198--7031Chr01:3736449..3736473 (25 bp)
GTACATCTCAAATTGCTCTATCCAA
LOC_Os01g07790
OsAffx.23155.1.S1_at--294--5731Chr01:3736603..3736627 (25 bp)
GACTGCGTGTCGATGCTATCATACA
LOC_Os01g07790
OsAffx.23155.1.S1_at--440--391Chr01:3736642..3736666 (25 bp)
ATCACTGACATCACATGTGGGCCTG
LOC_Os01g07790
OsAffx.23155.1.S1_at--65--10871Chr01:3736796..3736820 (25 bp)
TTGGACGATTCGAAACGGCACTGGT
LOC_Os01g07790
OsAffx.23155.1.S1_at--779--5571Chr01:3737104..3737128 (25 bp)
GAAAGTCCCATTATCATCGACCAGT
LOC_Os01g07790
OsAffx.23155.1.S1_at--164--5851Chr01:3737122..3737146 (25 bp)
GACCAGTTCTATTGTCCCCAAGGAA
LOC_Os01g07790
OsAffx.23155.1.S1_at--128--7491Chr01:3737267..3737291 (25 bp)
GTGTGGCCATAAGTGACGCAAGATT
LOC_Os01g07790
OsAffx.23155.1.S1_at--705--10171Chr01:3737292..3737316 (25 bp)
TATCAATATCCGTGGGACATCCTCC
LOC_Os01g07790
OsAffx.23155.1.S1_at--979--71Chr01:3737357..3737381 (25 bp)
ATTGCCAAGGCATCTACCTCAGTAA
LOC_Os01g07790
OsAffx.23155.1.S1_at--789--7611Chr01:3737396..3737420 (25 bp)
GGGAAAATCATACCGCCCTAGCAAA
LOC_Os01g07790
Target Sequence 
GACGGCATAACCATGGCAATTTCTGATCATGTGTACATCTCAAATTGCTCTATCCAAAGTGGAGACGACTGCGTGTCGAT
GCTATCATACACCACTGATGTTAACATCACTGACATCACATGTGGGCCTGGCCACGGCATCAGCGTGGGAAGCCTTGGAC
GATTCGAAACGGCACTGGTGGAACGAATTACAGTATCCAACTGTAACTTTATTGGAACAAAGAATGGTGTGAGGATCAAA
TCATGGCAGGGTGGAATGGGTCAAGCAACGGGGTTCATTTTTGAAAACATCAACATGACTGCAGTCGAAAGTCCCATTAT
CATCGACCAGTTCTATTGTCCCCAAGGAAACTGTCCATTAAAGGATGGTGGTGTGGCCATAAGTGACGCAAGATTTATCA
ATATCCGTGGGACATCCTCCGAGCAAGAGGCCATCAAGATATTGTGCAGTCAAAGTGTGCATTGCCAAGGCATCTACCTC
AGTAATATTAACCTCTCATGGGAAAATCATACCGCCCTAGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23155.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis