Browse Element(s) Details


Os.6842.1.S1_at

Description gb:AK121114.1
DB_XREF= gi:37990737
TID=Os.6842.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6842 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0089K24.4 (OSJNBa0089K24.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023073M05, full insert sequence.
FL= gb:AK121114.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g078109/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07740Os.7205.1.A1_at11/111+3710534..3715433DEAD/DEAH box helicase family protein, expressed
LOC_Os01g07750Os.10212.1.S1_at10/111+3716917..3719968expressed protein
LOC_Os01g07760Os.155.1.S1_a_at11/111+3721117..3725615Phospholipase D alpha 1 precursor, putative, expressed
LOC_Os01g07770Os.37754.1.S1_at6/111+3728952..3730732Peroxidase 25 precursor, putative
LOC_Os01g07780NANA1+3732652..3733608Embryo-specific protein 3, containing protein, expressed
LOC_Os01g07790OsAffx.23155.1.S1_at11/111+3734695..3737487Polygalacturonase family protein, expressed
LOC_Os01g07800OsAffx.23156.1.S1_at11/111+3737645..3738814hypothetical protein
LOC_Os01g07810Os.6842.1.S1_at9/111+3739548..3741341expressed protein
LOC_Os01g07820Os.47463.1.S1_x_at5/111+3745725..3749422transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g07820Os.14491.2.S1_x_at4/111+3745725..3749422transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g07830NANA1+3752090..3755422transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g07840Os.46306.1.S1_x_at5/111+3761348..3771443transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g07840Os.45976.1.S1_x_at4/111+3761348..3771443transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6842.1.S1_at--824--5051Chr01:3741044..3741068 (25 bp)
GCAGCAACCGCATCCAGGTGTCCAA
LOC_Os01g07810
Os.6842.1.S1_at--635--4151NONE
CGCGCTCGGGATGGCCATTGCAACA
NONE
Os.6842.1.S1_at--615--6631Chr01:3740206..3740230 (25 bp)
GTTGTAACTGTTGCGGAGATTCTTA
LOC_Os01g07810
Os.6842.1.S1_at--1060--1871Chr01:3739985..3740009 (25 bp)
ACGATGAATCGAGAGTTCGCCCGCT
LOC_Os01g07810
Os.6842.1.S1_at--717--10631NONE
TTCGCCCGCTCCAAAAGGCTAAGAT
NONE
Os.6842.1.S1_at--942--4051Chr01:3739713..3739737 (25 bp)
CGATGACCTTTGTTGTGTGCTTTGT
LOC_Os01g07810
Os.6842.1.S1_at--444--8691Chr01:3739698..3739722 (25 bp)
TGTGCTTTGTTCCTGTTGTTTAATA
LOC_Os01g07810
Os.6842.1.S1_at--918--9751Chr01:3739678..3739702 (25 bp)
TAATACTGCGTGCTTTAGAGATGGC
LOC_Os01g07810
Os.6842.1.S1_at--637--10031Chr01:3739663..3739687 (25 bp)
TAGAGATGGCATGCCTTCTTGTTTA
LOC_Os01g07810
Os.6842.1.S1_at--522--7431Chr01:3739634..3739658 (25 bp)
GTGTTTTTCTTTTATGGCAGTGTGT
LOC_Os01g07810
Os.6842.1.S1_at--361--8271Chr01:3739619..3739643 (25 bp)
GGCAGTGTGTGTAAACTCAGTGACT
LOC_Os01g07810
Target Sequence 
GCAGCAACCGCATCCAGGTGTCCAACACCAAGAAGCCACTCTTCTTCTATGTCAACCTCGCCAAGAGGTACATGCAGCAG
CACGGCGATGTCGAGCTCTCCGCGCTCGGGATGGCCATTGCAACAGTTGTAACTGTTGCGGAGATTCTTAAGAATAACGG
GTTTGCTGTTGAAAAGAAGATTAGAACATCTACGGTGGAAATAAACGATGAATCGAGAGTTCGCCCGCTCCAAAAGGCTA
AGATTGAGATAGTGTTAGAAAAGAGCGAGAAATTTGATGAGCTGATGGCTGCCGCAGCGGAAGAGAGGGAAGCTGCGGAA
GCTGAGGAGCAGGCCTGATAAGGACTAGGAGCGATGACCTTTGTTGTGTGCTTTGTTCCTGTTGTTTAATACTGCGTGCT
TTAGAGATGGCATGCCTTCTTGTTTAAGTTGTGTTTTTCTTTTATGGCAGTGTGTGTAAACTCAGTGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6842.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis