Browse Element(s) Details


Os.37754.1.S1_at

Description gb:AK058554.1
DB_XREF= gi:32968572
TID=Os.37754.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37754 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative peroxidase (OSJNBa0089K24.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-017-C12, full insert sequence.
FL= gb:AK058554.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g077706/11Peroxidase 25 precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07720Os.16184.1.S1_at11/111+3702116..3705791ALG3 protein, expressed
LOC_Os01g07720OsAffx.24443.1.S1_at1/111+3702116..3705791ALG3 protein, expressed
LOC_Os01g07730Os.51043.1.S1_at11/111+3708014..3710455Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative, expressed
LOC_Os01g07740Os.7205.1.A1_at11/111+3710534..3715433DEAD/DEAH box helicase family protein, expressed
LOC_Os01g07750Os.10212.1.S1_at10/111+3716917..3719968expressed protein
LOC_Os01g07760Os.155.1.S1_a_at11/111+3721117..3725615Phospholipase D alpha 1 precursor, putative, expressed
LOC_Os01g07770Os.37754.1.S1_at6/111+3728952..3730732Peroxidase 25 precursor, putative
LOC_Os01g07780NANA1+3732652..3733608Embryo-specific protein 3, containing protein, expressed
LOC_Os01g07790OsAffx.23155.1.S1_at11/111+3734695..3737487Polygalacturonase family protein, expressed
LOC_Os01g07800OsAffx.23156.1.S1_at11/111+3737645..3738814hypothetical protein
LOC_Os01g07810Os.6842.1.S1_at9/111+3739548..3741341expressed protein
LOC_Os01g07820Os.47463.1.S1_x_at5/111+3745725..3749422transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g07820Os.14491.2.S1_x_at4/111+3745725..3749422transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g07830NANA1+3752090..3755422transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37754.1.S1_at--37--3951Chr01:3729618..3729642 (25 bp)
CGGCTGATCCTGTATCTGTTCAGAG
LOC_Os01g07770
Os.37754.1.S1_at--79--3131Chr01:3729648..3729672 (25 bp)
AATTTGCAGCTCAAGGCCTGACGGA
LOC_Os01g07770
Os.37754.1.S1_at--527--5731Chr01:3729667..3729691 (25 bp)
GACGGACCGTGAGCTCGTAACACTA
LOC_Os01g07770
Os.37754.1.S1_at--373--7051NONE
GTAACACTAGTTGGTGCTCACACCA
NONE
Os.37754.1.S1_at--171--10491Chr01:3730631..3730655 (25 bp)
TTCAGCTACGAGTTCCCCAAGGCCA
LOC_Os01g07770
Os.37754.1.S1_at--987--8431Chr01:3730651..3730675 (25 bp)
GGCCATGGTCAGGATGAGCAGCATC
LOC_Os01g07770
Os.37754.1.S1_at--796--3471Chr01:3730705..3730729 (25 bp)
CAGGAGGAAGTGCTCCAAGTTCAAC
LOC_Os01g07770
Os.37754.1.S1_at--392--2831Chr01:3730721..3730745 (25 bp)
AAGTTCAACTAGGTGCAGTAGCCCA
NONE
Os.37754.1.S1_at--638--5031Chr01:3730735..3730759 (25 bp)
GCAGTAGCCCAGTCGACAGTGAATT
NONE
Os.37754.1.S1_at--1158--10211Chr01:3730759..3730783 (25 bp)
TTTGTGATCGATCGAGTCACCTGTC
NONE
Os.37754.1.S1_at--896--9371Chr01:3730770..3730794 (25 bp)
TCGAGTCACCTGTCCTGAATGATAT
NONE
Target Sequence 
CGGCTGATCCTGTATCTGTTCAGAGGCAAAAATTTGCAGCTCAAGGCCTGACGGACCGTGAGCTCGTAACACTAGTTGGT
GCTCACACCATCGGGCAGACGGACTGNATCTTTTTNCGGTACCNGNTCTACAACTTNACGGCGACGGNGAACGCGGNCCC
NGACNGATCANNNCGTNGGCGCTGCCGCAGCTGCGGGCGCTGTGCCCGCCCGCCGGCGACGGCTCCCGGCGCGTGGCGCT
GGACCTGGGCAGCCCGGGGGCGTTCGACGTGAGCTTCTTCAAGAACGTCAGGGACGGCGGCGCCGTGCTGGAGTCCGACC
AGCGGCTGTGGGGCGACGCCGCGACGCAGGCCGCCGTGCAGAGCTTCGCCGGCAACGTCAGGGGGCTCTTCGGCCTCCGG
TTCAGCTACGAGTTCCCCAAGGCCATGGTCAGGATGAGCAGCATCGCCGTCAAGACCGGCAGCCAGGGCGAGATCAGGAG
GAAGTGCTCCAAGTTCAACTAGGTGCAGTAGCCCAGTCGACAGTGAATTTTGTGATCGATCGAGTCACCTGTCCTGAATG
ATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37754.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis