Browse Element(s) Details

Os.49175.1.S1_at

Description

gb:AK109634.1
DB_XREF= gi:32994843
TID=Os.49175.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.49175 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-138-D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-138-D07, full insert sequence.
FL= gb:AK109634.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g50910	11/11	Phosphatidylinositol 3- and 4-kinase family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g50860	Os.9925.1.S1_at	10/11	6	+	30769704..30772815	expressed protein
LOC_Os06g50870	Os.53776.1.S1_at	10/11	6	+	30773203..30775617	DNL zinc finger family protein, expressed
LOC_Os06g50880	Os.18869.1.S1_at	11/11	6	+	30775910..30778654	transducin family protein, putative, expressed
LOC_Os06g50890	Os.10989.2.S1_at	11/11	6	+	30778798..30783597	RNA recognition motif family protein, expressed
LOC_Os06g50890	Os.10989.1.S1_a_at	11/11	6	+	30778798..30783597	RNA recognition motif family protein, expressed
LOC_Os06g50910	Os.48137.1.A1_at	11/11	6	+	30796115..30814785	Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os06g50910	Os.49175.1.S1_at	11/11	6	+	30796115..30814785	Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os06g50910	Os.24117.1.A1_at	1/11	6	+	30796115..30814785	Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os06g50910	OsAffx.31869.4.S1_x_at	1/11	6	+	30796115..30814785	Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os06g50900	Os.11409.1.S1_at	11/11	6	+	30798420..30800415	expressed protein
LOC_Os06g50900	OsAffx.4432.1.S1_at	1/11	6	+	30798420..30800415	expressed protein
LOC_Os06g50900	OsAffx.4432.1.S1_x_at	1/11	6	+	30798420..30800415	expressed protein
LOC_Os06g50920	Os.53650.1.S1_at	11/11	6	+	30816442..30822355	protein kinase family protein, putative, expressed
LOC_Os06g50930	Os.11287.1.S1_at	11/11	6	+	30822453..30824784	Senescence-associated protein DIN1, putative, expressed
LOC_Os06g50940	Os.56682.1.S1_at	11/11	6	+	30827275..30829400	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g50950	Os.27247.1.S1_at	11/11	6	+	30837055..30838936	GDSL-like Lipase/Acylhydrolase family protein, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0007004	biological_process	telomerase-dependent telomere maintenance
GO:0009793	biological_process	embryonic development (sensu Magnoliophyta)
GO:0043247	biological_process	telomere maintenance in response to DNA damage
GO:0004428	molecular_function	inositol or phosphatidylinositol kinase activity
GO:0016303	molecular_function	phosphatidylinositol 3-kinase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.49175.1.S1_at--234--213	1	Chr06:30796598..30796622 (25 bp)	ACAGGAGATCCCAGTAGCTAAGCAA	LOC_Os06g50910
Os.49175.1.S1_at--975--465	1	Chr06:30796539..30796563 (25 bp)	GCGGCAAAGTTTGACCCACAGGTGT	LOC_Os06g50910
Os.49175.1.S1_at--532--743	1	Chr06:30796516..30796540 (25 bp)	GTGTCTGAATCGAAAACGGCTTTGA	LOC_Os06g50910
Os.49175.1.S1_at--1107--145	1	Chr06:30796487..30796511 (25 bp)	AGCAGAGACCGTGTCAGGTTCCCCT	LOC_Os06g50910
Os.49175.1.S1_at--270--671	1	Chr06:30796470..30796494 (25 bp)	GTTCCCCTGCTCATCTATACATTGG	LOC_Os06g50910
Os.49175.1.S1_at--913--209	1	Chr06:30796374..30796398 (25 bp)	ACATCTGTGATTCTGTGCTTCTGAC	LOC_Os06g50910
Os.49175.1.S1_at--904--809	1	Chr06:30796318..30796342 (25 bp)	GGACCTCAAGTTTAGGCTGCATTTG	LOC_Os06g50910
Os.49175.1.S1_at--874--735	1	Chr06:30796290..30796314 (25 bp)	GTGAAGCTCTTGTCTTTGTCACAGC	LOC_Os06g50910
Os.49175.1.S1_at--620--1023	1	Chr06:30796276..30796300 (25 bp)	TTTGTCACAGCTTCTGGTTGCAGTT	LOC_Os06g50910
Os.49175.1.S1_at--386--121	1	Chr06:30796255..30796279 (25 bp)	AGTTTCTTTCAAAATCTCCACGATT	LOC_Os06g50910
Os.49175.1.S1_at--438--883	1	Chr06:30796117..30796141 (25 bp)	TGATTATATTTACTGGCTGCTTCTT	LOC_Os06g50910

Target Sequence

ACAGGAGATCCCAGTAGCTAAGCAAAGATGGAGAAGTGAGAGGCTGGGGGAGGGGGTGTGCGGCAAAGTTTGACCCACAG
GTGTGTCTGAATCGAAAACGGCTTTGAGGGCAGCAGAGACCGTGTCAGGTTCCCCTGCTCATCTATACATTGGCATGCAA
GTCTGCAGCCCTTGGCCCACGTGTCCCTCTCTCCTCTCTCTCATCACTTCACTTGGGTGTATGTACATCTGTGATTCTGT
GCTTCTGACTCCTTNATCTTGGTCCTCCACCTCAGCACATGGACCTCAAGTTTAGGCTGCATTTGAGNGTGAAGCTCTTG
TCTTTGTCACAGCTTCTGGTTGCAGTTTCTTTCAAAATCTCCACGATTACTTCAGATAATTTAGAATTTTTCTTAGATTT
AAGTATTTGCAGTTATACAATCTAGAAAATGACCAAAACATCAGAGGTTAGAAAACCTAACCTTTTCATATTATTGTCAT
NTGATTATATTTACTGGCTGCTTCTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis