Browse Element(s) Details


Os.49260.1.S1_at

Description gb:AK120309.1
DB_XREF= gi:37989932
TID=Os.49260.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49260 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013055D13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013055D13, full insert sequence.
FL= gb:AK120309.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1480011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g14780Os.7264.1.S1_at11/112+8197004..8199780Surp module family protein, expressed
LOC_Os02g14790Os.49813.1.S1_a_at11/112+8204989..8206392Peroxisomal targeting signal 2 receptor, putative, expressed
LOC_Os02g14800Os.54344.1.S1_x_at11/112+8209594..8218225expressed protein
LOC_Os02g14800Os.49260.1.S1_at11/112+8209594..8218225expressed protein
LOC_Os02g14810OsAffx.24259.1.S1_at11/112+8227855..8230367expressed protein
LOC_Os02g14820OsAffx.24260.1.S1_at11/112+8233527..8234627hypothetical protein
LOC_Os02g14830OsAffx.12041.1.S1_at11/112+8240993..8242952hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49260.1.S1_at--378--10051Chr02:8217625..8217649 (25 bp)
TAGTTTCCCAGTAGTTAGATCCCAA
LOC_Os02g14800
Os.49260.1.S1_at--366--6791Chr02:8217638..8217662 (25 bp)
GTTAGATCCCAATTATTTCGCTGTT
LOC_Os02g14800
Os.49260.1.S1_at--135--6631Chr02:8217682..8217706 (25 bp)
GTTGGGACCGATTGTTATACTGTTC
LOC_Os02g14800
Os.49260.1.S1_at--679--10171Chr02:8217697..8217721 (25 bp)
TATACTGTTCGGCAGACATCCTCTC
LOC_Os02g14800
Os.49260.1.S1_at--887--5651Chr02:8217711..8217735 (25 bp)
GACATCCTCTCGTTTAATGCATGAT
LOC_Os02g14800
Os.49260.1.S1_at--407--2271Chr02:8217980..8218004 (25 bp)
AAATCTATTCTGTTGGTGGCGCAAG
LOC_Os02g14800
Os.49260.1.S1_at--215--7551Chr02:8217995..8218019 (25 bp)
GTGGCGCAAGCATGATCCGGTTCAA
LOC_Os02g14800
Os.49260.1.S1_at--690--8851Chr02:8218007..8218031 (25 bp)
TGATCCGGTTCAACTGCAGTGGCAG
LOC_Os02g14800
Os.49260.1.S1_at--158--7951Chr02:8218055..8218079 (25 bp)
GGATATTGACACAACACCCGTTTCC
LOC_Os02g14800
Os.49260.1.S1_at--718--2531Chr02:8218085..8218109 (25 bp)
AACTCTTTTAAGCAGTCAGGTGGAC
LOC_Os02g14800
Os.49260.1.S1_at--886--9811Chr02:8218185..8218209 (25 bp)
TAACTAGTTGTATGGCCTGCGCAAT
LOC_Os02g14800
Target Sequence 
TAGTTTCCCAGTAGTTAGATCCCAATTATTTCGCTGTTTGGCAGACAGGTAATGTGGGTTGGGACCGATTGTTATACTGT
TCGGCAGACATCCTCTCGTTTAATGCATGATATTTTTAAAAATAGTTATATTTTTTTAAAAAAAATCAAGATAAATTAAT
ATATGATATATTACACGTTCTATTCATAGCCAAATTTTTTATTTTTGTTTTTACTTATATAAGTTGAATTTAAATATGCA
TGCTTGTAAAGTAATATATCACATATTGATCTATCTTATGAAAATTTTTAGTGACTTTTTTAAGCGACATAAAAAATGAG
GGGACATCCATTTTAAGGGATGAATAGAGTTTCCCAAATCTATTCTGTTGGTGGCGCAAGCATGATCCGGTTCAACTGCA
GTGGCAGCATCATTGGATTTAAATCAGAAAGGATATTGACACAACACCCGTTTCCTAGGAAACTCTTTTAAGCAGTCAGG
TGGACGTCCACCTGTTTTTTTCATGTGAACTAATTTGTTATAGAAAAAAAATCAAAAAATTGATAAGATAGATTAATATA
TAACTAGTTGTATGGCCTGCGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49260.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis