Browse Element(s) Details


Os.54344.1.S1_x_at

Description gb:AK103531.1
DB_XREF= gi:32988740
TID=Os.54344.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54344 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033131P19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033131P19, full insert sequence.
FL= gb:AK103531.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1480011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g14780Os.7264.1.S1_at11/112+8197004..8199780Surp module family protein, expressed
LOC_Os02g14790Os.49813.1.S1_a_at11/112+8204989..8206392Peroxisomal targeting signal 2 receptor, putative, expressed
LOC_Os02g14800Os.54344.1.S1_x_at11/112+8209594..8218225expressed protein
LOC_Os02g14800Os.49260.1.S1_at11/112+8209594..8218225expressed protein
LOC_Os02g14810OsAffx.24259.1.S1_at11/112+8227855..8230367expressed protein
LOC_Os02g14820OsAffx.24260.1.S1_at11/112+8233527..8234627hypothetical protein
LOC_Os02g14830OsAffx.12041.1.S1_at11/112+8240993..8242952hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54344.1.S1_x_at--982--5731Chr02:8215984..8216005 (22 bp)
GACGGTAGTAGTCGATTTCAACTTT
LOC_Os02g14800
Os.54344.1.S1_x_at--889--6411Chr02:8216026..8216050 (25 bp)
GATCATTTCATTTGCTCCGTACAGA
LOC_Os02g14800
Os.54344.1.S1_x_at--558--2092Chr02:8216066..8216276 (25 bp)
ACATCATATGTTCTGTTCCATCATG
LOC_Os02g14800
Os.54344.1.S1_x_at--180--6051Chr02:8216812..8216835 (24 bp)
GAGATCATATTCATTCCGGAGTAAC
LOC_Os02g14800
Os.54344.1.S1_x_at--902--5451Chr02:8216872..8216896 (25 bp)
GAACGTTGCTTCCATTATTTGATCT
LOC_Os02g14800
Os.54344.1.S1_x_at--645--2011Chr02:8216901..8216925 (25 bp)
ACTCAGATTGTAGTTGGGTCCTCAC
LOC_Os02g14800
Os.54344.1.S1_x_at--124--1811Chr02:8216924..8216948 (25 bp)
ACCCTCTAATCTCTCCTGAAAAATC
LOC_Os02g14800
Os.54344.1.S1_x_at--422--10731Chr02:8216952..8216976 (25 bp)
TTGATTCTCCTTTACCGAACGGCAG
LOC_Os02g14800
Os.54344.1.S1_x_at--489--5151Chr02:8216976..8217000 (25 bp)
GCAACGGCTTCTGTTGATCCAGGTA
LOC_Os02g14800
Os.54344.1.S1_x_at--269--6371Chr02:8216991..8217015 (25 bp)
GATCCAGGTAGTACTATTCCAGTCA
LOC_Os02g14800
Os.54344.1.S1_x_at--601--171Chr02:8217101..8217125 (25 bp)
ATTTTTCTATAGATGACCCTTGCAT
LOC_Os02g14800
Target Sequence 
GACGGTAGTAGTCGATTTCAACTTTTTAATAATTCCACAAACAGGGATCATTTCATTTGCTCCGTACAGAGAGTTACTGA
ACAATACATCATATGTTCTGTTCCATCATGAATATGTGCAGATATGTATTCAAGACAACCTACTTCTGAATTCTGATGTT
AAGTTGTTGACAGCAATTGAGAGGTATTTAAAGAATATGATTTGTGACAAATTCATTTTAGTGAAGATCAGCAGATCAGC
AATGCTCTTAATCTGAGATCATATTCATTCCGGAGTAACATTTTTGATATATTCAGTCTGGTTGCACTGAATATTGAACG
TTGCTTCCATTATTTGATCTAATGACTCAGATTGTAGTTGGGTCCTCACCCTCTAATCTCTCCTGAAAAATCAATTTGAT
TCTCCTTTACCGAACGGCAGCAACGGCTTCTGTTGATCCAGGTAGTACTATTCCAGTCAATTGAGAATTTTTTGAAGATC
GCATGAAAATGTGATATTGCAAGGGAATGTACATATTTGAGTTTGTAAGGAATTCTTTTTTGATATTTTTCTATAGATGA
CCCTTGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54344.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis