Browse Element(s) Details


Os.49813.1.S1_a_at

Description gb:AK111709.1
DB_XREF= gi:37988372
TID=Os.49813.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49813 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023041B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023025I02, full insert sequence.
FL= gb:AK112004.1 gb:AK112008.1 gb:AK111709.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1479011/11Peroxisomal targeting signal 2 receptor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g14770Os.2450.3.S1_x_at11/112+8172420..8184166Phosphoenolpyruvate carboxylase 1, putative, expressed
LOC_Os02g14770Os.2450.1.S1_a_at10/112+8172420..8184166Phosphoenolpyruvate carboxylase 1, putative, expressed
LOC_Os02g14770OsAffx.29538.2.S1_s_at8/112+8172420..8184166Phosphoenolpyruvate carboxylase 1, putative, expressed
LOC_Os02g14770OsAffx.18275.1.A1_at1/112+8172420..8184166Phosphoenolpyruvate carboxylase 1, putative, expressed
LOC_Os02g14780Os.7264.1.S1_at11/112+8197004..8199780Surp module family protein, expressed
LOC_Os02g14790Os.49813.1.S1_a_at11/112+8204989..8206392Peroxisomal targeting signal 2 receptor, putative, expressed
LOC_Os02g14800Os.54344.1.S1_x_at11/112+8209594..8218225expressed protein
LOC_Os02g14800Os.49260.1.S1_at11/112+8209594..8218225expressed protein
LOC_Os02g14810OsAffx.24259.1.S1_at11/112+8227855..8230367expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006625biological_processprotein targeting to peroxisome
GO:0007186biological_processG-protein coupled receptor protein signaling pathway
GO:0007275biological_processdevelopment
GO:0016568biological_processchromatin modification
GO:0005634cellular_componentnucleus
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0016585cellular_componentchromatin remodeling complex
GO:0000166molecular_functionnucleotide binding
GO:0005053molecular_functionperoxisome targeting signal-2 binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49813.1.S1_a_at--282--771Chr02:8205503..8205527 (25 bp)
ATGTCCTGCTCCTACGACATGACGG
LOC_Os02g14790
Os.49813.1.S1_a_at--77--691Chr02:8205485..8205509 (25 bp)
ATGACGGTGTGCATGTGGGATTACC
LOC_Os02g14790
Os.49813.1.S1_a_at--811--6151Chr02:8205438..8205462 (25 bp)
GAGGTATGGCCACCACACTGAATTC
LOC_Os02g14790
Os.49813.1.S1_a_at--1038--1691Chr02:8205427..8205451 (25 bp)
ACCACACTGAATTCGTTGCCGGGAT
LOC_Os02g14790
Os.49813.1.S1_a_at--723--10691Chr02:8205412..8205436 (25 bp)
TTGCCGGGATCGACATGAGCGTGCT
LOC_Os02g14790
Os.49813.1.S1_a_at--1027--5771Chr02:8205356..8205380 (25 bp)
GACGAGATGATCTATGTGTGGCCAT
LOC_Os02g14790
Os.49813.1.S1_a_at--1055--8451Chr02:8205338..8205362 (25 bp)
TGGCCATTTGGCTCTGATCCTAGAG
LOC_Os02g14790
Os.49813.1.S1_a_at--416--2471Chr02:8205288..8205312 (25 bp)
AACACATATTTCGTACGTCGAGGGA
LOC_Os02g14790
Os.49813.1.S1_a_at--810--7931Chr02:8205260..8205284 (25 bp)
GGATTATTTCTGTTGCGTTTTGCAT
LOC_Os02g14790
Os.49813.1.S1_a_at--656--3051Chr02:8205163..8205187 (25 bp)
AATCACCTAGTTGTTAAGTTCTTCA
LOC_Os02g14790
Os.49813.1.S1_a_at--466--9851Chr02:8205069..8205093 (25 bp)
TACAACCCCGATAGTGCATAGGACT
LOC_Os02g14790
Target Sequence 
ATGTCCTGCTCCTACGACATGACGGTGTGCATGTGGGATTACCGCAAGGAGGACGCGCTGCTCGCGAGGTATGGCCACCA
CACTGAATTCGTTGCCGGGATCGACATGAGCGTGCTCGTGGAAGGGTTGCTCGCGAGCACCGGGTGGGACGAGATGATCT
ATGTGTGGCCATTTGGCTCTGATCCTAGAGCAATGTAAACAAAATGCCTTTGGAGAACACATATTTCGTACGTCGAGGGA
TATGGATTATTTCTGTTGCGTTTTGCATTGGTCATAGTAATACATGTGGATTAACTCCTTTGAGTTGAAGAAATTGCAAT
AAAGATCCTATTGCTATCTAAATCACCTAGTTGTTAAGTTCTTCACTTAGACTCAAAGTGCATAATGTATTGCTAGTATA
TAATGTTGGTTGTAGGGCAAATTAGTGGGGGTTCTACAACCCCGATAGTGCATAGGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49813.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis