Browse Element(s) Details


OsAffx.18275.1.A1_at

Description gb:NM_195699.1
DB_XREF= gi:37532757
TID=OsAffx.18275.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0093I09.5), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g147701/11Phosphoenolpyruvate carboxylase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g14740NANA2+8151391..8151966hypothetical protein
LOC_Os02g14750NANA2+8157598..8158715hypothetical protein
LOC_Os02g14760Os.5802.1.S1_at11/112+8164660..8169144RNA-binding protein, putative, expressed
LOC_Os02g14770Os.2450.3.S1_x_at11/112+8172420..8184166Phosphoenolpyruvate carboxylase 1, putative, expressed
LOC_Os02g14770Os.2450.1.S1_a_at10/112+8172420..8184166Phosphoenolpyruvate carboxylase 1, putative, expressed
LOC_Os02g14770OsAffx.29538.2.S1_s_at8/112+8172420..8184166Phosphoenolpyruvate carboxylase 1, putative, expressed
LOC_Os02g14770OsAffx.18275.1.A1_at1/112+8172420..8184166Phosphoenolpyruvate carboxylase 1, putative, expressed
LOC_Os02g14780Os.7264.1.S1_at11/112+8197004..8199780Surp module family protein, expressed
LOC_Os02g14790Os.49813.1.S1_a_at11/112+8204989..8206392Peroxisomal targeting signal 2 receptor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006099biological_processtricarboxylic acid cycle
GO:0008964molecular_functionphosphoenolpyruvate carboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18275.1.A1_at--1111--58Chr11:6168615..6168638 (24 bp)
ATTGACTTCACCATATTTGCCAAAG
NONE
OsAffx.18275.1.A1_at--128--77510Chr07:11207321..11207345 (25 bp)
GGTGTACAGCATAGTCAACCTGATC
NONE
OsAffx.18275.1.A1_at--1095--3151Chr10:8674864..8674888 (25 bp)
AATTGTTAAACTGCAACTGTGCTGC
NONE
OsAffx.18275.1.A1_at--959--10691Chr10:8674838..8674862 (25 bp)
TTGCCATCTTGATTAGGTCCTTCAC
NONE
OsAffx.18275.1.A1_at--865--8671Chr10:8674778..8674802 (25 bp)
TGTGCTCCCTGAGAGTTATCACCTT
NONE
OsAffx.18275.1.A1_at--384--1458Chr08:13301209..13301233 (25 bp)
AGAAGAACCGGTCCCAGGAACATCA
NONE
OsAffx.18275.1.A1_at--861--10371Chr10:8674638..8674662 (25 bp)
TTTTACCTTGTACTTTTGCACCACT
NONE
OsAffx.18275.1.A1_at--437--8918Chr11:17762256..17762275 (20 bp)
TGAGCTCAAGAACTGATTCCCTGCC
NONE
OsAffx.18275.1.A1_at--108--6455Chr08:13301346..13301370 (25 bp)
GATCAGGTGTCAACTTGTCTGGAGT
NONE
OsAffx.18275.1.A1_at--284--6291Chr10:8674500..8674524 (25 bp)
GATGTTGCCCTCATTAACATCAGAT
NONE
OsAffx.18275.1.A1_at--341--1271Chr10:8674479..8674503 (25 bp)
AGATAAGCCCAGCTGCTGAATCTTC
NONE
Target Sequence 
ATTGACTTCACCATATTTGCCAAAGTATTGATTAATATCCTAGATTGATTGATCAGAGCATGGTGTACAGCATAGTCAAC
CTGATCTTGGAAATTGTTAAACTGCAACTGTGCTGCATTGCCATCTTGATTAGGTCCTTCACCTTTAACTCCCTGAGCAC
CATCACCTTGAACTCCCTGTGCTCCCTGAGAGTTATCACCTTGATTTCCTTGAGAATCATCTGTAGCACCTTTGTTGCTC
GGTTGAGCCGAGCCATCTGGGGCTTGTTTCACCTCTCCATCCTTAGAAGAACCGGTCCCAGGAACATCAGCAACTACTTT
TACCTTGTACTTTTGCACCACTGTCCCCTTGCGGGTCTGCATGAATGAGCTCAAGAACTGATTCCCTGCCTGCTGCATCA
TTGCTTCGAAATCCTTCTTCTGATCAGGTGTCAACTTGTCTGGAGTAATGGTCACGATGTTGCCCTCATTAACATCAGAT
AAGCCCAGCTGCTGAATCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18275.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis