Browse Element(s) Details


Os.2450.1.S1_a_at

Description gb:AF271995.1
DB_XREF= gi:9828444
TID=Os.2450.1
CNT=49
FEA=FLmRNA
TIER=FL+Stack
STK=16
UG=Os.2450 (NCBI UniGene Cluster)
DEF=Oryza sativa phosphoenolpyruvate carboxylase mRNA, complete cds.
PROD=phosphoenolpyruvate carboxylase
FL= gb:AK065029.1 gb:AF271995.1 gb:AK062201.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1477010/11Phosphoenolpyruvate carboxylase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g14740NANA2+8151391..8151966hypothetical protein
LOC_Os02g14750NANA2+8157598..8158715hypothetical protein
LOC_Os02g14760Os.5802.1.S1_at11/112+8164660..8169144RNA-binding protein, putative, expressed
LOC_Os02g14770Os.2450.3.S1_x_at11/112+8172420..8184166Phosphoenolpyruvate carboxylase 1, putative, expressed
LOC_Os02g14770Os.2450.1.S1_a_at10/112+8172420..8184166Phosphoenolpyruvate carboxylase 1, putative, expressed
LOC_Os02g14770OsAffx.29538.2.S1_s_at8/112+8172420..8184166Phosphoenolpyruvate carboxylase 1, putative, expressed
LOC_Os02g14770OsAffx.18275.1.A1_at1/112+8172420..8184166Phosphoenolpyruvate carboxylase 1, putative, expressed
LOC_Os02g14780Os.7264.1.S1_at11/112+8197004..8199780Surp module family protein, expressed
LOC_Os02g14790Os.49813.1.S1_a_at11/112+8204989..8206392Peroxisomal targeting signal 2 receptor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006099biological_processtricarboxylic acid cycle
GO:0008964molecular_functionphosphoenolpyruvate carboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2450.1.S1_a_at--407--1411Chr02:8178719..8178743 (25 bp)
AGACAAAACAGCTACTCCTTCAGGT
LOC_Os02g14770
Os.2450.1.S1_a_at--21--10531NONE
TTCAGGTTGCCGGTCACAAGGATAT
NONE
Os.2450.1.S1_a_at--983--7651Chr02:8178293..8178317 (25 bp)
GGGATCCTTACCTGAAGCAGCGTCT
LOC_Os02g14770
Os.2450.1.S1_a_at--785--6031Chr02:8178258..8178282 (25 bp)
GAGTCGTACATCACTACCTTGAACG
LOC_Os02g14770
Os.2450.1.S1_a_at--17--2671Chr02:8178227..8178251 (25 bp)
AAGCCTACACCCTGAAGCGGATAAG
LOC_Os02g14770
Os.2450.1.S1_a_at--31--9771Chr02:8178206..8178230 (25 bp)
TAAGGGACCCTAGCTTCGAGGTGAT
LOC_Os02g14770
Os.2450.1.S1_a_at--1095--2911Chr02:8178162..8178186 (25 bp)
AAGGAGTTCGTCGACAGCAACCAGC
LOC_Os02g14770
Os.2450.1.S1_a_at--446--8611Chr02:8178128..8178152 (25 bp)
TGGTCCAACTGAACGCTGCGAGCGA
LOC_Os02g14770
Os.2450.1.S1_a_at--441--6091Chr02:8178105..8178129 (25 bp)
GAGTACGCACCTGGCCTGGAGGACA
LOC_Os02g14770
Os.2450.1.S1_a_at--351--5511Chr02:8178040..8178064 (25 bp)
GAACACAGGCTAGATTGTCCACAAG
LOC_Os02g14770
Os.2450.1.S1_a_at--661--5271Chr02:8178016..8178040 (25 bp)
GAATGCTTCCAGCAGGTGCAATCAA
LOC_Os02g14770
Target Sequence 
AGACAAAACAGCTACTCCTTCAGGTTGCCGGTCACAAGGATATTCTGGAAGGGGATCCTTACCTGAAGCAGCGTCTGCGG
CTGCGTGAGTCGTACATCACTACCTTGAACGTTTGCCAAGCCTACACCCTGAAGCGGATAAGGGACCCTAGCTTCGAGGT
GATGNCGCAGCCGGCCTTGTCGAAGGAGTTCGTCGACAGCAACCAGCCTGCCGAGCTGGTCCAACTGAACGCTGCGAGCG
AGTACGCACCTGGCCTGGAGGACACCCTCATCCTGACGATGAAGGGCATTGCTGCCGGCATGCAGAACACAGGCTAGATT
GTCCACAAGAATGCTTCCAGCAGGTGCAATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2450.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis