Browse Element(s) Details


OsAffx.29538.2.S1_s_at

Description tigr:9637.m02246
TID=OsAffx.29538.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g147708/11Phosphoenolpyruvate carboxylase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g14740NANA2+8151391..8151966hypothetical protein
LOC_Os02g14750NANA2+8157598..8158715hypothetical protein
LOC_Os02g14760Os.5802.1.S1_at11/112+8164660..8169144RNA-binding protein, putative, expressed
LOC_Os02g14770Os.2450.3.S1_x_at11/112+8172420..8184166Phosphoenolpyruvate carboxylase 1, putative, expressed
LOC_Os02g14770Os.2450.1.S1_a_at10/112+8172420..8184166Phosphoenolpyruvate carboxylase 1, putative, expressed
LOC_Os02g14770OsAffx.29538.2.S1_s_at8/112+8172420..8184166Phosphoenolpyruvate carboxylase 1, putative, expressed
LOC_Os02g14770OsAffx.18275.1.A1_at1/112+8172420..8184166Phosphoenolpyruvate carboxylase 1, putative, expressed
LOC_Os02g14780Os.7264.1.S1_at11/112+8197004..8199780Surp module family protein, expressed
LOC_Os02g14790Os.49813.1.S1_a_at11/112+8204989..8206392Peroxisomal targeting signal 2 receptor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006099biological_processtricarboxylic acid cycle
GO:0008964molecular_functionphosphoenolpyruvate carboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29538.2.S1_s_at--801--1716Chr03:31991303..31991327 (25 bp)
ACCAGTTCGCACAAATCCCCTAGAT
NONE
OsAffx.29538.2.S1_s_at--265--5136Chr03:31991311..31991335 (25 bp)
GCACAAATCCCCTAGATCGAGCAAA
NONE
OsAffx.29538.2.S1_s_at--633--3276Chr03:31991314..31991338 (25 bp)
CAAATCCCCTAGATCGAGCAAAACA
NONE
OsAffx.29538.2.S1_s_at--388--5956Chr03:31991329..31991353 (25 bp)
GAGCAAAACAAATCGAGCACGCCAT
NONE
OsAffx.29538.2.S1_s_at--443--3056Chr03:31991339..31991363 (25 bp)
AATCGAGCACGCCATAGACAGTGAG
NONE
OsAffx.29538.2.S1_s_at--51--1836Chr03:31991347..31991371 (25 bp)
ACGCCATAGACAGTGAGGAGAACGA
NONE
OsAffx.29538.2.S1_s_at--997--5376Chr03:31991384..31991408 (25 bp)
GAAGCAAATTCTTACCAAGAACATT
NONE
OsAffx.29538.2.S1_s_at--1094--9696Chr03:31991427..31991449 (23 bp)
TCAACAAGACATAATCTTCCAGGGT
NONE
OsAffx.29538.2.S1_s_at--433--5671NONE
GACATAATCTTCCAGGGTCAGGTAT
NONE
OsAffx.29538.2.S1_s_at--406--3571NONE
CATAATCTTCCAGGGTCAGGTATAT
NONE
OsAffx.29538.2.S1_s_at--787--5351NONE
GAAGACAGTTAAAGGTTCTGTTACA
NONE
Target Sequence 
ACCAGTTCGCACAAATCCCCTAGATCGAGCAAAACAAATCGAGCACGCCATAGACAGTGAGGAGAACGAGAAAAAGAAGA
AGAAGCAAATTCTTACCAAGAACATTGAGGTCAAGAAGTTGAAATCAACAAGACATAATCTTCCAGGGTCAGGTATATTG
CAATCTCAAAAATCAGGAGATACACAATTAGATGGATATGAAATGAGAAGCAAAATTGTGTCTGAAGAAATGAGAAGCAA
GAAGACAGTTAAAGGTTCTGTTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29538.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis