Browse Element(s) Details


Os.49270.1.S1_at

Description gb:AK071104.1
DB_XREF= gi:32981127
TID=Os.49270.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49270 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023078D20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023078D20, full insert sequence.
FL= gb:AK071104.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4096011/11Zinc finger, C2H2 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g40960Os.49270.1.S1_at11/116+24452134..24455498Zinc finger, C2H2 type family protein, expressed
LOC_Os06g40960OsAffx.29835.1.S1_x_at2/116+24452134..24455498Zinc finger, C2H2 type family protein, expressed
LOC_Os06g40960OsAffx.17417.1.S1_x_at2/116+24452134..24455498Zinc finger, C2H2 type family protein, expressed
LOC_Os06g40970OsAffx.28031.1.S1_x_at11/116+24459620..24462919hypothetical protein
LOC_Os06g40980OsAffx.19542.3.S1_x_at5/116+24467648..24471121retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0009813biological_processflavonoid biosynthesis
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49270.1.S1_at--1084--5891Chr06:24455029..24455053 (25 bp)
GAGCTGAGCTAATTAATTTCCATGA
LOC_Os06g40960
Os.49270.1.S1_at--390--151Chr06:24455056..24455080 (25 bp)
ATTAGTTAACCGTGCTGCTACTACT
LOC_Os06g40960
Os.49270.1.S1_at--160--2031Chr06:24455075..24455099 (25 bp)
ACTACTACTATGTCTGTGATTCTGT
LOC_Os06g40960
Os.49270.1.S1_at--647--7411Chr06:24455090..24455114 (25 bp)
GTGATTCTGTGTACACCACGGGATT
LOC_Os06g40960
Os.49270.1.S1_at--454--6331Chr06:24455143..24455167 (25 bp)
GATGCATGATACTGCGAATTTTCAA
LOC_Os06g40960
Os.49270.1.S1_at--34--1571Chr06:24455247..24455271 (25 bp)
AGCTAGCAGATGTGTGTGTACGTAC
LOC_Os06g40960
Os.49270.1.S1_at--635--7431Chr06:24455262..24455286 (25 bp)
GTGTACGTACTTTGTTCTCTAGAAA
LOC_Os06g40960
Os.49270.1.S1_at--244--1171Chr06:24455286..24455310 (25 bp)
AGTACTACGTACGACTTGAGTTCTA
LOC_Os06g40960
Os.49270.1.S1_at--615--3591Chr06:24455300..24455324 (25 bp)
CTTGAGTTCTAATCGTTTGGTTGGA
LOC_Os06g40960
Os.49270.1.S1_at--427--6471Chr06:24455329..24455353 (25 bp)
GATACAGAACCCTATAGCGGCTTCA
LOC_Os06g40960
Os.49270.1.S1_at--1114--7331Chr06:24455360..24455384 (25 bp)
GTGCAGACTTTTCATTTGATTTGGT
LOC_Os06g40960
Target Sequence 
GAGCTGAGCTAATTAATTTCCATGATAATTAGTTAACCGTGCTGCTACTACTACTATGTCTGTGATTCTGTGTACACCAC
GGGATTGGAATGGAGAGGATATGGGGGTATAGATGATGCATGATACTGCGAATTTTCAAGGGTTTTTTTTTTAATTTTGG
GGGTATATTAATGAATTAGTTGATGATGAGGAACAAATTAATTACTACATTTGCAGCAAGCTAGCAGATGTGTGTGTACG
TACTTTGTTCTCTAGAAAGTACTACGTACGACTTGAGTTCTAATCGTTTGGTTGGATGGAGATACAGAACCCTATAGCGG
CTTCATTGTATGTGCAGACTTTTCATTTGATTTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49270.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis